View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6796_high_7 (Length: 434)
Name: NF6796_high_7
Description: NF6796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6796_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Complemental strand, 47712701 - 47712290
Alignment:
| Q |
1 |
gttggtgccgttgaggaaggttttggagttgcctgaggtgtttattggggctaatcgatggaaattgattccttacaacagggttgcgtctgtggcgatg |
100 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712701 |
gttggtgccattgaggaaggttttggagttgcctgaggtgtttattggggctaatcgatggaaattgattccttacaacagggttgcgtctgtggcgatg |
47712602 |
T |
|
| Q |
101 |
gagttttataaagagaagtttttgaagcatgataaaaagaggtttgagaagtatttggaggatgtgaaagtggggaagactacgatcgctgctggtgctt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712601 |
gagttttataaagagaagtttttgaagcatgataaaaagaggtttgagaagtatttggaggatgtgaaagtggggaagactacgatcgctgctggtgctt |
47712502 |
T |
|
| Q |
201 |
tgcttcctcatgacattattcggtcgttgggggatggagatggtggagaggtggcggagttacagtggacgagaatggtggatgatttgctcaagaaagg |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712501 |
tgcttcctcatgatattattcggtcgttgggggatggagatggtggagaggtggcggagttacagtggacgagaatggtggatgatttgctcaagaaagg |
47712402 |
T |
|
| Q |
301 |
gaagatgaggaattgtcttgctgtgtgtgatgtttctgggagtatgactgggatccctatggatgtgtgtgtggcattgggattgttggtgtctgaattg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47712401 |
gaagatgaggaattgtcttgctgtgtgtgatgtttctgggagtatgactgggatccctatggatgtgtgtgtggcattgggattgttggtgtctgaattg |
47712302 |
T |
|
| Q |
401 |
tgtgaggaacct |
412 |
Q |
| |
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|||||||||||| |
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| T |
47712301 |
tgtgaggaacct |
47712290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 19795802 - 19795403
Alignment:
| Q |
1 |
gttggtgccgttgaggaaggttttggagttgcctgaggtgtttattggggctaatcgatggaaattgattccttacaacagggttgcgtctgtggcgatg |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| |||||||| ||||| |||||||| |||||||||||| |
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| T |
19795802 |
gttggtgccgttgaggaaggtgttggagttgcctgaggtgtttattggtgctaatcaatggggtttgattccatacaatagggttgcttctgtggcgatg |
19795703 |
T |
|
| Q |
101 |
gagttttataaagagaagtttttgaagcatgataaaaagaggtttgagaagtatttggaggatgtgaaagtggggaagactacgatcgctgctggtgctt |
200 |
Q |
| |
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|||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||| | ||||||||||| || ||||||||||||| |
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| T |
19795702 |
aagttttataaggagaagtttttgaagcatgataaggagaggtttgagaagtacttggaggatgtgaaggcagggaagactactattgctgctggtgctt |
19795603 |
T |
|
| Q |
201 |
tgcttcctcatgacattattcggtcgttgggggatggagatggtggagaggtggcggagttacagtggacgagaatggtggatgatttgctcaagaaagg |
300 |
Q |
| |
|
|||||||||| || ||||| ||| |||| |||| |||||||||||| ||||| ||||| ||||||| |||||| || ||||||||||||||||| || |
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| T |
19795602 |
tgcttcctcacgagattatagagtctttggatgatgaagatggtggagaagtggctgagttgcagtggaagagaattgttgatgatttgctcaagaaggg |
19795503 |
T |
|
| Q |
301 |
gaagatgaggaattgtcttgctgtgtgtgatgtttctgggagtatgactgggatccctatggatgtgtgtgtggcattgggattgttggtgtctgaattg |
400 |
Q |
| |
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|| ||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
19795502 |
aaaaatgaggaattgtcttgctgtgtgtgatgtgtctgggagtatgcatgggacccctatggaggtgtgtgtggcattggggttgttggtgtctgaattg |
19795403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 19785785 - 19786189
Alignment:
| Q |
1 |
gttggtgccgttgaggaaggttttggagttgcctgaggtgtttattggggctaatcgatggaaattgattccttacaacagggttgcgtctgtggcgatg |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| |||||||||||||| || ||||| |||||||||||| |
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|
| T |
19785785 |
gttggtgccgttgaggaaggtgttggagttgcctgaggtgtttattggtgctaatcaatggggtttgattccttacaatagagttgcttctgtggcgatg |
19785884 |
T |
|
| Q |
101 |
gagttttataaagagaagtttttgaagcatgataaaaagaggtttgagaagtatttggaggatgtgaaagtggggaagactacgatcgctgctggtgctt |
200 |
Q |
| |
|
|||||||||| || |||||||||||||||||||| |||||||||||||||| ||| |||||||||| | || |||||||| || ||||||||||||| |
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|
| T |
19785885 |
aagttttataaggaaaagtttttgaagcatgataaggagaggtttgagaagtacttgaaggatgtgaaggcaggaaagactactattgctgctggtgctt |
19785984 |
T |
|
| Q |
201 |
tgcttcctcatgacattattcggtcgttgggggatggagatggtggagaggtggcggagttacagtggacgagaatggtggatgatttgctcaagaaagg |
300 |
Q |
| |
|
|||||||||| | ||||| ||| ||||||||||||||||||||||| || || ||||| ||||||| |||||| || |||||||||||||||||||| |
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| T |
19785985 |
tgcttcctcaccagattatagagtctttgggggatggagatggtggagaagttgctgagttgcagtggaagagaattgttgatgatttgctcaagaaagg |
19786084 |
T |
|
| Q |
301 |
gaagatgaggaattgtcttgctgtgtgtgatgtttctgggagtatgactgggatccctatggatgtgtgtgtggcattgggattgttggtgtctgaattg |
400 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||| ||| |||||| |||||||| |||| | |||||||||| |||||||||||||||||| |
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| T |
19786085 |
aaagatgaaaaattgtcttgcagtgtgtgatgtttctgggagcatgtctgggactcctatggaggtgtctttggcattggggttgttggtgtctgaattg |
19786184 |
T |
|
| Q |
401 |
tgtga |
405 |
Q |
| |
|
|||| |
|
|
| T |
19786185 |
agtga |
19786189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 411
Target Start/End: Complemental strand, 15835109 - 15834699
Alignment:
| Q |
1 |
gttggtgccgttgaggaaggttttggagttgcctgaggtgtttattggggctaatcgatggaaattgattccttacaacagggttgcgtctgtggcgatg |
100 |
Q |
| |
|
|||||||||||||||||||| ||| | |||||||||||||||||||||||||||| |||| ||||||||||| || |||||||| |||||||| ||| |
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| T |
15835109 |
gttggtgccgttgaggaaggcgttgcaattgcctgaggtgtttattggggctaatcaatggggtttgattccttataatagggttgcttctgtggccatg |
15835010 |
T |
|
| Q |
101 |
gagttttataaagagaagtttttgaagcatgataaaaagaggtttgagaagtatttggaggatgtgaaagtggggaagactacgatcgctgctggtgctt |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| | |||||||||||||||| ||| |||||||||| | ||||||||||| || ||||||||||||| |
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|
| T |
15835009 |
gagttttataaggagaagtttttgaagcatgatgaggagaggtttgagaagtacttgcaggatgtgaaggcagggaagactactatggctgctggtgctt |
15834910 |
T |
|
| Q |
201 |
tgcttcctcatgacattattcggtcgttgggggatggagatggtggagaggtggcggagttacagtggacgagaatggtggatgatttgctcaagaaagg |
300 |
Q |
| |
|
||||||||||| | ||||| ||| || | ||||| |||||||||| |||| ||||| ||||||| |||||| || |||||||||||||||||||| |
|
|
| T |
15834909 |
tgcttcctcataagattataaagtcttttttgaatggatatggtggagaagtggatgagttgcagtggaagagaattgttgatgatttgctcaagaaagg |
15834810 |
T |
|
| Q |
301 |
gaagatgaggaattgtcttgctgtgtgtgatgtttctgggagtatgactgggatccctatggatgtgtgtgtggcattgggattgttggtgtctgaattg |
400 |
Q |
| |
|
||||||| ||||||||||| |||| |||||| |||| ||||||| ||||| ||||||||| |||| |||||||||||| |||||||||||||||||| |
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|
| T |
15834809 |
aaagatgaaaaattgtcttgcagtgtctgatgtgtctgcgagtatgtatgggacccctatggaggtgtctgtggcattggggttgttggtgtctgaattg |
15834710 |
T |
|
| Q |
401 |
tgtgaggaacc |
411 |
Q |
| |
|
| |||||||| |
|
|
| T |
15834709 |
agcgaggaacc |
15834699 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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