View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6796_high_8 (Length: 352)
Name: NF6796_high_8
Description: NF6796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6796_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 14 - 334
Target Start/End: Complemental strand, 46186224 - 46185904
Alignment:
| Q |
14 |
aagaatatgaatccaagcaaattttaactactcgatcaaaacttgaggagcatgcttcatttgtttataaaagaaacattttctgcaaatttcaagaaga |
113 |
Q |
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| T |
46186224 |
aagaatatgaatccaagcgcattttaactactggatcaaaacttgaagagcatgcttcatttgtttataaaagaaaaattttctgcaaatttcaagaaga |
46186125 |
T |
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| Q |
114 |
gcttgcacagatcaacaatttcactaaaattagaagattcaaagagaaggaccgagatatgagtatgaagtgtctaatggctacaaccctaaagatacct |
213 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
46186124 |
gcttgcacggatcaacaatttcactaaaattagaagattcaaagagaaggaccgagatatgagtatgaagtgtctaatggctacaacccaaaagatacct |
46186025 |
T |
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| Q |
214 |
tcattgtacatgtagatttaggccaggagttgctaaatgtggctgccactatatgaattcatgggatttttcaatcaaaaggtattgtgcaaatccctga |
313 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46186024 |
tcattgtccatgtagatttaggccaaaagttgctaaatgtggctgccactatatgaattcatgggatttttcaatcaaaaggtattgtgcaaatccctga |
46185925 |
T |
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| Q |
314 |
tcatttcattctgcaacattg |
334 |
Q |
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||||||||||||||||||||| |
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| T |
46185924 |
tcatttcattctgcaacattg |
46185904 |
T |
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