View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6796_high_9 (Length: 347)
Name: NF6796_high_9
Description: NF6796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6796_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 16008534 - 16008790
Alignment:
| Q |
17 |
catcaaacataattcttttttaaccaaagtcttaactacattcacaataaaacaaaactatcctaagactattacatctcccacatcgatagactaagaa |
116 |
Q |
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| T |
16008534 |
catcaaacataattcttttttaaccaaagtcttaactacattcacaataaaacaaaactatcctaagactattacatgtcccacatcgatagactaagaa |
16008633 |
T |
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| Q |
117 |
agcatgtaagtgtttatatattgttggtgagagtgcagaaaacaccgggcttggtaacgctagcttgtgacccaagtgggggtattaaagttttggaagt |
216 |
Q |
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| T |
16008634 |
agcatgtaagtgtttatatattgttggtgagagtgcagaaaacaccgggcttggtagcgctagcttgtgacccaagtgtgggtattaaagttttggaagt |
16008733 |
T |
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| Q |
217 |
tgctgtgactatgggttgggtaagggaacatggccatcttgg-ttgtcaggtttgat |
272 |
Q |
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| T |
16008734 |
tgctgtgactatgggttgggtaagggaacctggccatcttggtttgtcaggtttgat |
16008790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 326
Target Start/End: Original strand, 16008840 - 16008894
Alignment:
| Q |
272 |
tcgagcggtcgatcttcatggaaactctgggttaagctgtcttaacagagcagcg |
326 |
Q |
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| T |
16008840 |
tcgagcggtcgatcttcatggaaactctgggttaagctgacttaacagagcagcg |
16008894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 44273402 - 44273341
Alignment:
| Q |
155 |
aaaacaccgggcttggtaacgctagcttgtgacccaagtgggggtattaaagttttggaagt |
216 |
Q |
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| T |
44273402 |
aaaataccgggcttggtagcgcaagcctatgacccaagtgggggtattaaggtgttggaagt |
44273341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 170 - 200
Target Start/End: Original strand, 9031815 - 9031845
Alignment:
| Q |
170 |
gtaacgctagcttgtgacccaagtgggggta |
200 |
Q |
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| T |
9031815 |
gtaacgctagcttgtgacccaagtgggggta |
9031845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 21321656 - 21321702
Alignment:
| Q |
155 |
aaaacaccgggctt-ggtaacgctagcttgtgacccaagtgggggta |
200 |
Q |
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| T |
21321656 |
aaaacaccgggctttggtaacgcaagcctgtgacccaagtgggggta |
21321702 |
T |
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