View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6796_low_10 (Length: 346)
Name: NF6796_low_10
Description: NF6796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6796_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 25 - 310
Target Start/End: Complemental strand, 45983067 - 45982782
Alignment:
| Q |
25 |
gtggcgggaatggaaggaagtgagagcgaggccgtttttgaatcggtgatgaatctgaatccacaactcttcttcaacgaagttctcaacaccgttgacg |
124 |
Q |
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| T |
45983067 |
gtggcgggaatggaaggaagtgagagcgaggccgtttttgaatcggtgatgaatctgaatccacaactcttcttcaacgaagttctcaacaccgttgacg |
45982968 |
T |
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| Q |
125 |
atttcttcatcgatactttcgatttctacttccagtaactaactaacccctttctcgcttcttcttctttcttcaaattttgttgttattgcaattctac |
224 |
Q |
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| T |
45982967 |
atttcttcatcgatactttcgatttctacttccagtaactaactaacccctttctcgcttcttcttctttcttcaaattttgttgttattgcaattctac |
45982868 |
T |
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| Q |
225 |
agcgtaattgatcattgtgtttcagggaagcatccaccaagctcaacaccgaagctactcaaagatcccaacatctcacacaggtt |
310 |
Q |
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| T |
45982867 |
agcgtaattgatcattgtgtttcagggaagcatccaccaagctcaatgctgaagctactcaaagatcccaacatctcacacaggtt |
45982782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 46 - 163
Target Start/End: Original strand, 45867961 - 45868078
Alignment:
| Q |
46 |
gagagcgaggccgtttttgaatcggtgatgaatctgaatccacaactcttcttcaacgaagttctcaacaccgttgacgatttcttcatcgatactttcg |
145 |
Q |
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| T |
45867961 |
gagagcgatgcgattttcgaatcggtgatgaatttgaatccacaactcttcttcaacgaagttctcaacactgttgatgatttcgtcctcgatactttcg |
45868060 |
T |
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| Q |
146 |
atttctacttccagtaac |
163 |
Q |
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| T |
45868061 |
atttctacttccagtaac |
45868078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 45868155 - 45868223
Alignment:
| Q |
242 |
tgtttcagggaagcatccaccaagctcaacaccgaagctactcaaagatcccaacatctcacacaggtt |
310 |
Q |
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| T |
45868155 |
tgtttcagggaagcatccaccaagctcaatgctgaagctactcaaagatcccaacatctcacacaggtt |
45868223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 40892841 - 40892909
Alignment:
| Q |
242 |
tgtttcagggaagcatccaccaagctcaacaccgaagctactcaaagatcccaacatctcacacaggtt |
310 |
Q |
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| T |
40892841 |
tgtttcagggaagcacccaccaagcccaatgctgaacctacccaaagatcccaacatcttatacaggtt |
40892909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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