View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6796_low_11 (Length: 329)
Name: NF6796_low_11
Description: NF6796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6796_low_11 |
 | |
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| [»] chr2 (5 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
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|
| [»] chr1 (2 HSPs) |
| |
|
| [»] scaffold0214 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 329
Target Start/End: Original strand, 1026946 - 1027260
Alignment:
| Q |
15 |
catcaccggaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1026946 |
catcaccggaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccataatttgcatctccaaatgctaaggtggacaaaacaatc |
1027045 |
T |
|
| Q |
115 |
gtttgggtgagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaa |
214 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
1027046 |
gtttgggtgagatatccagggttgaacctagtttactatgatgagagctttctcttagctatggcttctgctcttggtcgccccattaaggttgatagaa |
1027145 |
T |
|
| Q |
215 |
acacactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggta |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1027146 |
acacactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctgactatgccggtcgtaggaaagatttgggtaaacggacattggta |
1027245 |
T |
|
| Q |
315 |
caaagtccagtacga |
329 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1027246 |
caaagtccagtacga |
1027260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 15 - 326
Target Start/End: Complemental strand, 14656857 - 14656546
Alignment:
| Q |
15 |
catcaccggaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatc |
114 |
Q |
| |
|
|||||| ||||||||||||||||| || || || || ||| ||||||| |||||| |||| |||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
14656857 |
catcacgggaggcccttggttaatctttgatcactgcctcacagtcacccactggtcgcctgaatttgcatctccgaatgctaaagtggacaaaacaatt |
14656758 |
T |
|
| Q |
115 |
gtttgggtgagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaa |
214 |
Q |
| |
|
|||||||| ||||| ||||| ||||| |||| |||||||| ||||| || | ||||||||||||||||||||| | |||||||| || ||||| |||| |
|
|
| T |
14656757 |
gtttgggttagattcccaggtctgaacttagtgtactatgatgagagtttcttgttagctatggcttctgctcttggccgccccatcaaagttgacacaa |
14656658 |
T |
|
| Q |
215 |
acacactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggta |
314 |
Q |
| |
|
|||| |||||||||||| ||||||||||||| ||||| ||||| || |||||||| ||| ||||||| ||||| || |||||||| ||||| | |||||| |
|
|
| T |
14656657 |
acaccctgaaaattgaaagaggtaaattcgccagagtctgtgtggaaattgatctgactgtgccggtggtagggaaaatttgggtcaacggactttggta |
14656558 |
T |
|
| Q |
315 |
caaagtccagta |
326 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
14656557 |
caaagttcagta |
14656546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 22 - 329
Target Start/End: Complemental strand, 35138424 - 35138117
Alignment:
| Q |
22 |
ggaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttggg |
121 |
Q |
| |
|
|||||||| |||||||| || || || ||||||||||| |||||||||| || |||||||| ||||||||||| ||||| ||||||||||| || |||| |
|
|
| T |
35138424 |
ggaggcccgtggttaatctttgatcactgtctcgcagtagcacactggactcctgaatttgcttctccaaatgccaaggtagacaaaacaattgtctggg |
35138325 |
T |
|
| Q |
122 |
tgagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacact |
221 |
Q |
| |
|
| ||||||||||| || || || || || ||||| |||||||| || ||||| ||||| ||||||||| | ||||| ||||| || || |||||||| || |
|
|
| T |
35138324 |
taagatttccaggtttaaatcttgtgtattatgatgagagcttcctattagccatggcatctgctcttggccgccctattaaagtagacacaaacactct |
35138225 |
T |
|
| Q |
222 |
gaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtc |
321 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||||||||| |||||||| ||| ||||||| || || || |||||||| ||||| || |||||||||||| |
|
|
| T |
35138224 |
gaaaatcgaacgtggtaaatttgcaagagtttgtgttgaaattgatctcactttgccggttgtcggtaaaatttgggttaacggacactggtacaaagtc |
35138125 |
T |
|
| Q |
322 |
cagtacga |
329 |
Q |
| |
|
|||||||| |
|
|
| T |
35138124 |
cagtacga |
35138117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 22 - 329
Target Start/End: Complemental strand, 42406420 - 42406113
Alignment:
| Q |
22 |
ggaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttggg |
121 |
Q |
| |
|
||||| ||||||||||| | |||||||||||| ||||||||||| ||| | || || || || ||||||||||| || ||||| | |||| ||||||||| |
|
|
| T |
42406420 |
ggaggtccttggttaatttacgaccattgtcttgcagtcacacattggtcccccgagttcgcctctccaaatgccaaagtggaaagaacagtcgtttggg |
42406321 |
T |
|
| Q |
122 |
tgagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacact |
221 |
Q |
| |
|
| | |||||||| | || ||||| || || ||||| || |||||| |||||||||| || || || | || || || || ||||| || ||||| || |
|
|
| T |
42406320 |
tccgttttccaggtctaaatctagtctattacgacgaaagttttctcctagctatggcctcagcaattggccgaccaatcaaagttgacacgaacaccct |
42406221 |
T |
|
| Q |
222 |
gaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtc |
321 |
Q |
| |
|
|||| |||||||||| ||||| |||||||| |||||||||||||| || ||| |||| || || || |||||||||||||| || || ||||||||| | |
|
|
| T |
42406220 |
gaaagttgaacgaggaaaatttgcaagagtctgtgttgagattgacctcactctgccagtagtggggaagatttgggtaaatggacactggtacaaaatt |
42406121 |
T |
|
| Q |
322 |
cagtacga |
329 |
Q |
| |
|
|||||||| |
|
|
| T |
42406120 |
cagtacga |
42406113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 67 - 329
Target Start/End: Original strand, 174231 - 174493
Alignment:
| Q |
67 |
tggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatcgtttgggtgagatttccagggttgaacctagtttactatgacgagagctttc |
166 |
Q |
| |
|
||||| || |||||||| ||||||||||| ||||| ||| ||| | |||||||| | ||||| || || || || ||||||||||| || |||||| |
|
|
| T |
174231 |
tggactccggaatttgcttctccaaatgcaaaggttgaccgcacagtagtttgggtacgttttcctggtttaaatctcgtttactatgatgaaagctttt |
174330 |
T |
|
| Q |
167 |
tcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattga |
266 |
Q |
| |
|
| | || |||||||| ||||| || | || || |||||||| || || || |||||| ||||| | || |||||||| ||||| |||||||| ||||| |
|
|
| T |
174331 |
tgctcgcaatggcttcggctctaggtaggcctatcaaggttgacaccaataccctgaaagttgaaaggggaaaattcgcgagagtctgtgttgaaattga |
174430 |
T |
|
| Q |
267 |
tctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagtacga |
329 |
Q |
| |
|
||| ||| | ||||| || || || || ||||| ||||| || |||||||| || |||||||| |
|
|
| T |
174431 |
tctcactgtcccggtggtggggaaaatatgggtgaacggtcactggtacaaggttcagtacga |
174493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 15 - 264
Target Start/End: Complemental strand, 8310877 - 8310630
Alignment:
| Q |
15 |
catcaccggaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatc |
114 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8310877 |
catcaccggaggcccttagttaatattcgaccattgtcttgcagtcacacactgaatgccagaatttgcatctccaaatgctaaggtggacaaaacaatc |
8310778 |
T |
|
| Q |
115 |
gtttgggtgagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaa |
214 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
8310777 |
gtttcagtgagatttccagggctgaacctagtttactatgacgagagctttctcttagctatggcttctgctcttggccgccccattaagattgatacaa |
8310678 |
T |
|
| Q |
215 |
acacactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagatt |
264 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8310677 |
--acactgaaaattgaacaaggtaaattcgcaagagtttgtgttgagatt |
8310630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 329
Target Start/End: Original strand, 11894115 - 11894429
Alignment:
| Q |
15 |
catcaccggaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatc |
114 |
Q |
| |
|
|||||| ||||| |||||||||||||| || || || || ||||||||||||||| | || ||||||||||||||||| | || || ||||||||||| |
|
|
| T |
11894115 |
catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaactccaaagttgacaaaacaatt |
11894214 |
T |
|
| Q |
115 |
gtttgggtgagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaa |
214 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||| |||||||| ||||| || | |||| ||||||||||||||| | |||||||| ||||| || |||| |
|
|
| T |
11894215 |
gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaa |
11894314 |
T |
|
| Q |
215 |
acacactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggta |
314 |
Q |
| |
|
|||| |||||||||||| ||||||| || || ||||| ||||| || |||||||||||||||||||| ||||| || |||||||| ||||| |||||||| |
|
|
| T |
11894315 |
acaccctgaaaattgaaagaggtaagtttgccagagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggta |
11894414 |
T |
|
| Q |
315 |
caaagtccagtacga |
329 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
11894415 |
caaagttcagtacga |
11894429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 8278462 - 8278393
Alignment:
| Q |
260 |
agattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagtacga |
329 |
Q |
| |
|
|||||||| | ||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8278462 |
agattgatatgactatgcaggtcataggaaagatttgggtaaacggatattggtacaaagtccagtacga |
8278393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 260 - 329
Target Start/End: Complemental strand, 8307271 - 8307202
Alignment:
| Q |
260 |
agattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagtacga |
329 |
Q |
| |
|
|||||||| | ||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
8307271 |
agattgatatgactatgcaggtcataggaaagatttgggtaaacggatattggtacaaagtccagtacga |
8307202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 314
Target Start/End: Original strand, 23421449 - 23421645
Alignment:
| Q |
118 |
tgggtgagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaaca |
217 |
Q |
| |
|
||||| ||||| ||||| ||||||| || |||||||| || ||||| || ||||| ||||||||||| | | | || || || || || ||||||| |
|
|
| T |
23421449 |
tgggtcagattcccaggtctgaaccttgtatactatgatgaaagcttccttttagcaatggcttctgcgatcggaagaccaatcaaagtcgacacaaaca |
23421548 |
T |
|
| Q |
218 |
cactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggta |
314 |
Q |
| |
|
|||||||| ||||| |||| ||||| |||||||| ||||| || |||||||| || | || |||||||| || |||||||| || || |||||||| |
|
|
| T |
23421549 |
cactgaaagttgaaagaggaaaatttgcaagagtgtgtgtcgaaattgatctcacggtcccagtcgtagggaaaatttgggttaatggtcattggta |
23421645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 3662843 - 3662772
Alignment:
| Q |
15 |
catcaccggaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatc |
86 |
Q |
| |
|
|||||||||||| |||||| | || |||||||||||| | || ||||| |||||| | |||||||||||||| |
|
|
| T |
3662843 |
catcaccggaggaccttggatgattttcgaccattgtttggctgtcacccactggtcaccagaatttgcatc |
3662772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 15479866 - 15479784
Alignment:
| Q |
22 |
ggaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtgga |
104 |
Q |
| |
|
||||| ||||||||||| | |||||||||||| ||||||||||| ||| | | || ||||| ||||||||||| || ||||| |
|
|
| T |
15479866 |
ggaggtccttggttaatttacgaccattgtcttgcagtcacacattggtccctcgagtttgcctctccaaatgccaaagtgga |
15479784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 257
Target Start/End: Complemental strand, 53611430 - 53611316
Alignment:
| Q |
143 |
tagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaaacacactgaaaattgaacgaggtaaatt |
242 |
Q |
| |
|
||||||| |||||||| | ||||| || ||||||||||| || || ||||||| || ||||| || |||||||| |||||| | ||| |||| ||||| |
|
|
| T |
53611430 |
tagtttattatgacgaaaattttcttttggctatggcttcagcaattggtcgcccgataaaggtggacacaaacactctgaaagtcgaaagaggaaaatt |
53611331 |
T |
|
| Q |
243 |
cgcaagagtttgtgt |
257 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
53611330 |
tgcgagagtttgtgt |
53611316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 329
Target Start/End: Complemental strand, 23135765 - 23135451
Alignment:
| Q |
15 |
catcaccggaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatc |
114 |
Q |
| |
|
|||||| ||||| |||||||||||||| || || || || ||||||||||||||| | || ||||||||||||||||| | || || ||||||||||| |
|
|
| T |
23135765 |
catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacaccaaagttgacaaaacaatt |
23135666 |
T |
|
| Q |
115 |
gtttgggtgagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaa |
214 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||| |||||||| ||||| || | |||| ||||||||||||||| | |||||||| ||||| || |||| |
|
|
| T |
23135665 |
gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagcaatggcttctgctcttggccgccccatcaaggtcgacacaa |
23135566 |
T |
|
| Q |
215 |
acacactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggta |
314 |
Q |
| |
|
|||| |||||||||||| ||||||| || || ||||| ||||| || |||||||||||||||||||| ||||| || |||||||| ||||| |||||||| |
|
|
| T |
23135565 |
acaccctgaaaattgaaagaggtaagtttgccagagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggta |
23135466 |
T |
|
| Q |
315 |
caaagtccagtacga |
329 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
23135465 |
caaagttcagtacga |
23135451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 329
Target Start/End: Original strand, 20281816 - 20282130
Alignment:
| Q |
15 |
catcaccggaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaatgctaaggtggacaaaacaatc |
114 |
Q |
| |
|
|||||| ||||| |||||||||||||| || || || || ||||||||||||||| | || ||||||||||||||||| | || || ||||||||||| |
|
|
| T |
20281816 |
catcacgggaggtccttggttaatatttgatcactgccttgcagtcacacactggtcacctgaatttgcatctccaaacaccaaagttgacaaaacaatt |
20281915 |
T |
|
| Q |
115 |
gtttgggtgagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatacaa |
214 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||| |||||||| ||||| || | |||| ||||||||||||||| | |||||||| ||||| || |||| |
|
|
| T |
20281916 |
gtttgggtgagattcccaggtctgaacttagtatactatgatgagagtttcttgctagccatggcttctgctcttggccgccccatcaaggtcgacacaa |
20282015 |
T |
|
| Q |
215 |
acacactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggta |
314 |
Q |
| |
|
|||| |||||||||||| ||||||| || || ||||| ||||| || |||||||||||||||||||| ||||| || |||||||| ||||| |||||||| |
|
|
| T |
20282016 |
acaccctgaaaattgaaagaggtaagtttgccagagtctgtgtggaaattgatctaactatgccggtggtagggaaaatttgggtcaacggacattggta |
20282115 |
T |
|
| Q |
315 |
caaagtccagtacga |
329 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
20282116 |
caaagttcagtacga |
20282130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 218
Target Start/End: Original strand, 50448952 - 50449057
Alignment:
| Q |
113 |
tcgtttgggtgagatttccagggttgaacctagtttactatgacgagagctttctcttagctatggcttctgctctttgtcgccccattaaggttgatac |
212 |
Q |
| |
|
|||||||||| |||||||||| ||||||| || ||||| ||||||||||| || ||||| ||||||||||| || |||| || || || ||||| || |
|
|
| T |
50448952 |
tcgtttgggttcgatttccaggtctgaaccttgtctactacgacgagagcttcctattagccatggcttctgcaattggtcgaccgatcaaagttgacac |
50449051 |
T |
|
| Q |
213 |
aaacac |
218 |
Q |
| |
|
|||||| |
|
|
| T |
50449052 |
aaacac |
50449057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 79 - 326
Target Start/End: Original strand, 7810816 - 7811063
Alignment:
| Q |
79 |
tttgcatctccaaatgctaaggtggacaaaacaatcgtttgggtgagatttccagggttgaacctagtttactatgacgagagctttctcttagctatgg |
178 |
Q |
| |
|
|||||||||||| |||| || ||||| ||||| |||||||||||||||| ||||||||| ||||| ||||| ||||||||||| || | ||||||| |
|
|
| T |
7810816 |
tttgcatctccagatgccaaagtggatcgcacaatagtttgggtgagatttctagggttgaatctagtctactacgacgagagcttcctgcttgctatgg |
7810915 |
T |
|
| Q |
179 |
cttctgctctttgtcgccccattaaggttgatacaaacacactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgcc |
278 |
Q |
| |
|
|||| || ||| | ||||| || || || || || |||||||||||||||||| |||| |||||||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
7810916 |
cttcagcacttggccgcccaataaaagtggacactaacacactgaaaattgaaagaggaaaattcgcaagagtctgtgttgaaattgatcttactatgcc |
7811015 |
T |
|
| Q |
279 |
ggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagta |
326 |
Q |
| |
|
||| |||||||| |||||||| ||||| |||||||||||||||||||| |
|
|
| T |
7811016 |
ggtagtaggaaaaatttgggttaacggccattggtacaaagtccagta |
7811063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 182
Target Start/End: Original strand, 23942086 - 23942132
Alignment:
| Q |
136 |
ttgaacctagtttactatgacgagagctttctcttagctatggcttc |
182 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
23942086 |
ttgaacctagtttattatgacgagagctttctcctagctatggcttc |
23942132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0214 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0214
Description:
Target: scaffold0214; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 320
Target Start/End: Original strand, 6079 - 6200
Alignment:
| Q |
199 |
attaaggttgatacaaacacactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttggg |
298 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||| | ||||| || || |||||||||| ||| ||||||| || |||||||| | ||||| || |||| |
|
|
| T |
6079 |
attaaggttgacacaaacacgctgaaagttgaaaggggtaagtttgctcgagtttgtgtcgaggttgatctcacaatgccggtgattggaaaaatctggg |
6178 |
T |
|
| Q |
299 |
taaacgggcattggtacaaagt |
320 |
Q |
| |
|
|||| || |||||||| ||||| |
|
|
| T |
6179 |
taaatggtcattggtataaagt |
6200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 13030282 - 13030209
Alignment:
| Q |
19 |
accggaggcccttggttaatattcgaccattgtctcgcagtcacacactggacgccagaatttgcatctccaaa |
92 |
Q |
| |
|
|||||||| |||||| | || |||||||||||| | || ||||| |||||| | |||||||||||||| ||||| |
|
|
| T |
13030282 |
accggaggaccttggatgattttcgaccattgtttggctgtcactcactggtcaccagaatttgcatcaccaaa |
13030209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 329
Target Start/End: Complemental strand, 7590679 - 7590598
Alignment:
| Q |
248 |
gagtttgtgttgagattgatctaactatgccggtcgtaggaaagatttgggtaaacgggcattggtacaaagtccagtacga |
329 |
Q |
| |
|
|||| ||||||||||||||||| || ||||||| || || || |||||||| || || |||||||||||| | |||||||| |
|
|
| T |
7590679 |
gagtctgtgttgagattgatcttacggtgccggtagtgggtaaaatttgggtcaatggacattggtacaaaatacagtacga |
7590598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 317
Target Start/End: Complemental strand, 46787558 - 46787437
Alignment:
| Q |
196 |
cccattaaggttgatacaaacacactgaaaattgaacgaggtaaattcgcaagagtttgtgttgagattgatctaactatgccggtcgtaggaaagattt |
295 |
Q |
| |
|
||||| ||||||||||| ||||| || || ||||| |||| |||||||| ||||| || ||||| ||||| || ||| | ||||| || || || || | |
|
|
| T |
46787558 |
cccataaaggttgatactaacactcttaaggttgaaagaggaaaattcgctagagtatgcgttgaaattgaccttactgttccggtggtggggaaaatat |
46787459 |
T |
|
| Q |
296 |
gggtaaacgggcattggtacaa |
317 |
Q |
| |
|
|||| ||||| ||||||||||| |
|
|
| T |
46787458 |
gggtgaacggacattggtacaa |
46787437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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