View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6796_low_12 (Length: 323)
Name: NF6796_low_12
Description: NF6796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6796_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 314
Target Start/End: Complemental strand, 26357770 - 26357475
Alignment:
| Q |
19 |
acaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatc |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26357770 |
acaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttagtaatagcttgttgaatctttaggtattgcatc |
26357671 |
T |
|
| Q |
119 |
agttcttagttcttactcttggttatgtataattgttgctcaatttctgttccctgctcaacttaattgtactatatcactcgctatgcataactgttgc |
218 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26357670 |
agttcttagttcttactcttggttatgtataattgttgctcaatttctgttccctgctcaacttaattgtactatatcactcgctatgcataactgttgc |
26357571 |
T |
|
| Q |
219 |
tctctgtttatttacacaagccatttttctgtcttttttctttgtccaaattcctaattttgcatctacttgaacttgttattattgtggcttata |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26357570 |
tctctgtttatttacacaagccatttttctgtcttttttccttgtccaaattcctaattttgcatctacttgaacttgttattattgtggcttata |
26357475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 51759598 - 51759446
Alignment:
| Q |
19 |
acaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatc |
118 |
Q |
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|
|||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| || |||||| |
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| T |
51759598 |
acaaccaacttttgatttggaatgttagtataacagttggatgctgcccttttgatttagagtgttagtaatagcttgttgaatctttagatactgcatc |
51759499 |
T |
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| Q |
119 |
agttcttagttcttactcttggttatgtataattgttgctcaatttctgttccctgctca |
178 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||| ||||||| ||||| |
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|
| T |
51759498 |
agtt-------cttactcttggttatgtataattgttgcttaatttatgttcccagctca |
51759446 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 6684998 - 6684843
Alignment:
| Q |
19 |
acaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatc |
118 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||| ||||||| | ||||||||||||||||||||||| |||||| |
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|
| T |
6684998 |
acaaccaacttttgatttggaatattagtataacagttggatgctgcccttttgatttagagtgttaggtatagcttgttgaatctttaggtactgcatc |
6684899 |
T |
|
| Q |
119 |
agttcttagttcttactcttggttatgtataattgttgctcaatttctgttccctgctcaact |
181 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
6684898 |
agtt-------cttactcttggttatgtataattgttgcataatttatgttcccagctcaact |
6684843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 19 - 171
Target Start/End: Complemental strand, 30821973 - 30821828
Alignment:
| Q |
19 |
acaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatc |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||| || ||| |
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|
| T |
30821973 |
acaaccaacttttgatttggaatgttagtataacagttggatgctgcccttttgattaagagtgttagtaatagcttgttgaatatttaggtactgaatc |
30821874 |
T |
|
| Q |
119 |
agttcttagttcttactcttggttatgtataattgttgctcaatttctgttcc |
171 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||| |||||||||||| |
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|
| T |
30821873 |
agtt-------cttactcttggttatttataattgttgcttaatttctgttcc |
30821828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 12592676 - 12592521
Alignment:
| Q |
19 |
acaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatc |
118 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||| | |||| |||||||||| ||||||||||||||| | |||| |
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|
| T |
12592676 |
acaaccaacttttgatttggaatgttagtataacagttggatgctgcccttttgatttagtttgttagtaatagcttattgaatctttaggtactacatc |
12592577 |
T |
|
| Q |
119 |
agttcttagttcttactcttggttatgtataattgttgctcaatttctgttccctgctcaact |
181 |
Q |
| |
|
| ||||| ||||||||||||||||||| ||||| ||||||||||||| |||||||| |
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|
| T |
12592576 |
-------aattctttctcttggttatgtataattattgcttaatttctgttcccagctcaact |
12592521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 181
Target Start/End: Complemental strand, 30812711 - 30812556
Alignment:
| Q |
19 |
acaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatc |
118 |
Q |
| |
|
|||||||| |||||||||| |||||||||||||| ||||||| | |||| |||||| ||||||| |||||||||||||||||||||||||| || ||| |
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|
| T |
30812711 |
acaaccaatttttgatttgaaatgttagtataacagttggatgttgccctgttgattaagagtgttagtaatagcttgttgaatctttaggtactgaatc |
30812612 |
T |
|
| Q |
119 |
agttcttagttcttactcttggttatgtataattgttgctcaatttctgttccctgctcaact |
181 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
30812611 |
agtt-------cttactcttggttatttataattgttgcttaatttatgttcccagctcaact |
30812556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 181
Target Start/End: Complemental strand, 27810677 - 27810568
Alignment:
| Q |
65 |
cccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagttcttagttcttactcttggttatgtataattgttgctcaattt |
164 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||| |
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| T |
27810677 |
cccttttgatttagagtgttagtaatagcttgttgaatctttaggtactgcatcagtt-------cttactcttggttatttataattgttgcttaattt |
27810585 |
T |
|
| Q |
165 |
ctgttccctgctcaact |
181 |
Q |
| |
|
|||||||| ||||||| |
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|
| T |
27810584 |
ctgttcccatctcaact |
27810568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 181
Target Start/End: Original strand, 2942525 - 2942576
Alignment:
| Q |
130 |
cttactcttggttatgtataattgttgctcaatttctgttccctgctcaact |
181 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
2942525 |
cttactcttggttatgtatgattgttgcttaatttctgttcccagctcaact |
2942576 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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