View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6796_low_17 (Length: 261)

Name: NF6796_low_17
Description: NF6796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6796_low_17
NF6796_low_17
[»] chr5 (3 HSPs)
chr5 (1-241)||(7141307-7141547)
chr5 (1-213)||(7154105-7154317)
chr5 (92-172)||(7131652-7131732)
[»] chr6 (3 HSPs)
chr6 (1-171)||(12425434-12425604)
chr6 (1-171)||(12268081-12268251)
chr6 (127-209)||(12438646-12438728)
[»] chr4 (2 HSPs)
chr4 (1-171)||(55958663-55958833)
chr4 (1-168)||(55955107-55955274)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 7141547 - 7141307
Alignment:
Q  1 ggtgggtgtaacctcaatgtttctttgatcactaactttaagtaacttagtttctctacatcagtttcatatattagttccttaccattgaatgcttgtc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141547 ggtgggtgtaacctcaatgtttctttgatcactaactttaagtaacttagtttctctacatcagtttcatatattagttccttaccattgaatgcttgtc 7141448  T
Q  101 ttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcagttccagcaacaaa 200  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7141447 ttaattcagcttgtgccttctccctcactcttggatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcagttccagcaacaaa 7141348  T
Q  201 tacatcctgaaattatagaagaacatgtatagaattcaata 241  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  7141347 tacatcctgaaattatagaagaacatgtatagaattcaata 7141307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 7154317 - 7154105
Alignment:
Q  1 ggtgggtgtaacctcaatgtttctttgatcactaactttaagtaacttagtttctctacatcagtttcatatattagttccttaccattgaatgcttgtc 100  Q
    |||||||||||||||| ||||||||||||||||||||| |||||| ||||||  | || ||||| |||| |||||| || ||| || |||||||||| ||    
T  7154317 ggtgggtgtaacctcattgtttctttgatcactaacttaaagtaagttagttcatttagatcagattcagatattattttctttcctttgaatgcttctc 7154218  T
Q  101 ttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcagttccagcaacaaa 200  Q
    ||| |||||||||||| || |  ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||    
T  7154217 ttagttcagcttgtgctttttctctcacacttggatttttcatcatttctgacatagcccactctattgttgtcgatgttgtatcagttccggcaacaaa 7154118  T
Q  201 tacatcctgaaat 213  Q
    ||| |||||||||    
T  7154117 tacgtcctgaaat 7154105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 7131732 - 7131652
Alignment:
Q  92 atgcttgtcttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgttg 172  Q
    |||||| ||||| ||||||||||||||| ||| |||| ||||| |||||||||| ||||||||| |||||| |||||||||    
T  7131732 atgcttctcttatttcagcttgtgccttgttcatcacacttgggtttttcatcagttctgacatggcccatactattgttg 7131652  T

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Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 12425434 - 12425604
Alignment:
Q  1 ggtgggtgtaacctcaatgtttctttgatcactaactttaagtaacttagtttctctacatcagtttcatatattagttccttaccattgaatgcttgtc 100  Q
    ||||||||||||||||  |||||||||||||||||||| ||||| |  ||||| | || |||| | |||||||||   | |||||| || |  |||| ||    
T  12425434 ggtgggtgtaacctcagggtttctttgatcactaacttcaagtacccaagtttatgtagatcactctcatatattctcttcttacctttaacagcttctc 12425533  T
Q  101 ttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgtt 171  Q
    ||| ||||||||||||||||||| |||||||||| |||||||| |  |||||||||||||| |||||||||    
T  12425534 ttatttcagcttgtgccttcttcatcactcttgggtttttcattaactctgacatagcccactctattgtt 12425604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 12268251 - 12268081
Alignment:
Q  1 ggtgggtgtaacctcaatgtttctttgatcactaactttaagtaacttagtttctctacatcagtttcatatattagttccttaccattgaatgcttgtc 100  Q
    ||||||||||||||||  ||||||||||||||| |||| |||||||| ||||  |  | |||| ||||||| |||   | |||||| ||  |  ||| ||    
T  12268251 ggtgggtgtaacctcagggtttctttgatcactgacttcaagtaactaagttcatgcaaatcactttcataaattctcttcttacctttacaaacttctc 12268152  T
Q  101 ttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgtt 171  Q
    ||| |||||||||||| ||| |||||||||| || |||||||| |  |||||||||||||| |||||||||    
T  12268151 ttatttcagcttgtgctttcatcctcactctagggtttttcattaactctgacatagcccaatctattgtt 12268081  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 209
Target Start/End: Original strand, 12438646 - 12438728
Alignment:
Q  127 actcttggatttttcatcatttctgacatagcccattctattgttgtcgatgatgtatcagttccagcaacaaatacatcctg 209  Q
    |||||||||||||||| ||||||||| |  ||||||||||  ||||| | ||||||  || ||||||||| ||||| ||||||    
T  12438646 actcttggatttttcaacatttctgaaaaggcccattctaaagttgtagctgatgtcccacttccagcaaaaaatatatcctg 12438728  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 55958663 - 55958833
Alignment:
Q  1 ggtgggtgtaacctcaatgtttctttgatcactaactttaagtaacttagtttctctacatcagtttcatatattagttccttaccattgaatgcttgtc 100  Q
    ||||| ||||||||||  ||||||||||||||| | || |||||||| ||||  | || |||| | |||||| ||   |  ||||| || || | || ||    
T  55958663 ggtggatgtaacctcatagtttctttgatcactgaattcaagtaactaagttcttgtagatcactctcatatgttctctttttacctttaaaggtttctc 55958762  T
Q  101 ttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctattgtt 171  Q
    ||| ||||| ||||||||||||| |||||||||| ||||||||||  |||||||| ||||| |||||||||    
T  55958763 ttatttcagattgtgccttcttcatcactcttgggtttttcatcaactctgacattgcccagtctattgtt 55958833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 55955107 - 55955274
Alignment:
Q  1 ggtgggtgtaacctcaatgtttctttgatcactaactttaagtaacttagtttctctacatcagtttcatatattagttccttaccattgaatgcttgtc 100  Q
    ||||||||||||||||  ||||||||||||||| |||| |||||||| ||||  | || |||| | |||||||||   |  || || || |  |||| ||    
T  55955107 ggtgggtgtaacctcatggtttctttgatcactgacttcaagtaactaagttcatgtagatcactctcatatattctctttttccctttaacagcttctc 55955206  T
Q  101 ttaattcagcttgtgccttcttcctcactcttggatttttcatcatttctgacatagcccattctatt 168  Q
    ||| ||| | |||||| |||||| |||||||||  ||||||||||  |||||||||||||| ||||||    
T  55955207 ttatttcggattgtgctttcttcatcactcttgagtttttcatcaactctgacatagcccactctatt 55955274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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