View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6796_low_2 (Length: 675)
Name: NF6796_low_2
Description: NF6796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6796_low_2 |
 | |
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| [»] scaffold1613 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 113 - 659
Target Start/End: Complemental strand, 43960543 - 43959992
Alignment:
| Q |
113 |
ccgaataagcaaatgatgaattggtgttgaagatgtaaccacatgcaaaatctgttcccaataatatgccaacgggatacgtaaggaatttgtttggtat |
212 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43960543 |
ccgaataagcaaaggatgaattggtgttgaagatgtaaccacatgcaaaatttgttcccaataatatgccaacgggatacgtaaggaatttgtttggtat |
43960444 |
T |
|
| Q |
213 |
gggaagtgtttttattcatagtctctcaacgtcacaaggcaaaatcactgtcactataataatgataaaataggagcgatcaatttatttacttgataaa |
312 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43960443 |
gggaagtgttcttattcatagtctctcaacgtcacaaggcaaaatcactgtcactataataatgataaaataggagcgatcaatttatttacttgataaa |
43960344 |
T |
|
| Q |
313 |
ttactctcatcttcggtcaaaagaagaa-aaaacatttactctcacctcttaagatgccaattttaaaatcaagnnnnnnnnactnnnnnnnncaatttt |
411 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
43960343 |
ttactctcatcttcggtcaaaagaagaaaaaaaaacttactctcacctcttaagatgccaattttaaaatcaagttttttttactaaaaaaaacaatttt |
43960244 |
T |
|
| Q |
412 |
catatcatcaagctctatcttattgcct--nnnnnnnnnnnntcttattgatcatgtatc-nnnnnnnnnnnnngaaggatattgatcacgtatctgtta |
508 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
43960243 |
catatcatcaagctctatcttattgcctcaaaaaaaaaaaaatcttattgatcatgtatctttattttttttttgaaggatattgatcacgtatctgtta |
43960144 |
T |
|
| Q |
509 |
tggagaaaag-aaaacaaaatctcctttgcttcttatcacacttaagaatacgtgataagaaatttccagtaacagatatattcccagtaaatttcttaa |
607 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43960143 |
tggagaaaagaaaaaaaaaatctcctttgcttcttatcacacttaagaatacgtgataagaaatttccagtaacagatatattcccagtaaatttcttaa |
43960044 |
T |
|
| Q |
608 |
aacccgctgtttccctttattttctgcttaatcgcagtcaacaagtagtaaa |
659 |
Q |
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||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43960043 |
aacccactgtttccctttattttctttttaatcgcagtcaacaagtagtaaa |
43959992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 17033421 - 17033301
Alignment:
| Q |
2 |
catcaatcaaaaaggaagaaatgctcagcttgaagaaca--caccctcacaacaccctaaaaccccttaatagccccaaactcaaacaatagtcagcgac |
99 |
Q |
| |
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||||||||||||||||| |||||||||||| |||| ||| |||||||| |||||| || ||| ||| |||| ||| ||||||||||||||| || |||| |
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| T |
17033421 |
catcaatcaaaaaggaaaaaatgctcagctcgaaggacatacaccctcaaaacaccatataacacctcaataacccaaaactcaaacaatagccaacgac |
17033322 |
T |
|
| Q |
100 |
accgaaaatggacccgaataa |
120 |
Q |
| |
|
||||||||||||| ||||| |
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|
| T |
17033321 |
gacgaaaatggacccaaataa |
17033301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 38544983 - 38545024
Alignment:
| Q |
2 |
catcaatcaaaaaggaagaaatgctcagcttgaagaacacac |
43 |
Q |
| |
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||||||||||||||||| |||||||||||| |||| |||||| |
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| T |
38544983 |
catcaatcaaaaaggaaaaaatgctcagctcgaaggacacac |
38545024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 2e-48; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 39184435 - 39184553
Alignment:
| Q |
2 |
catcaatcaaaaaggaagaaatgctcagcttgaagaacacaccctcacaacaccctaaaaccccttaatagccccaaactcaaacaatagtcagcgacac |
101 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| ||||||||| |
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| T |
39184435 |
catcaatcaaaaaggaaaaaatgctcagcttgaagaacacaccctcacaacaccctaaaaccccttaacaaccccaaactaaaacaatagccagcgacac |
39184534 |
T |
|
| Q |
102 |
cgaaaatggacccgaataa |
120 |
Q |
| |
|
||||||||||||||||||| |
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| T |
39184535 |
cgaaaatggacccgaataa |
39184553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 24072512 - 24072631
Alignment:
| Q |
2 |
catcaatcaaaaaggaagaaatgctcagcttgaagaacac--accctcacaacaccctaaaaccccttaatagccccaaactcaaacaatagtcagcgac |
99 |
Q |
| |
|
||||||||||| ||||| ||||||||| || |||| |||| ||||| | | ||||||||| | |||||| | ||| ||||| |||||| || |||||| |
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| T |
24072512 |
catcaatcaaataggaaaaaatgctcaactcgaaggacacgcacccttaaagcaccctaaa-caccttaacaacccaaaacttaaacaagagctagcgac |
24072610 |
T |
|
| Q |
100 |
accgaaaatggacccgaataa |
120 |
Q |
| |
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| |||| |||||||||||||| |
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| T |
24072611 |
aacgaatatggacccgaataa |
24072631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1613 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1613
Description:
Target: scaffold1613; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 1262 - 1303
Alignment:
| Q |
2 |
catcaatcaaaaaggaagaaatgctcagcttgaagaacacac |
43 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| |||||| |
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|
| T |
1262 |
catcaatcaaaaaggaaaaaatgctcagctcgaaggacacac |
1303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 9106998 - 9106879
Alignment:
| Q |
2 |
catcaatcaaaaaggaagaaatgctcagcttgaagaacac--accctcacaacaccctaaaaccccttaatagccccaaactcaaacaatagtcagcgac |
99 |
Q |
| |
|
||||||||||||||||| |||| |||| || |||| |||| ||||||| | ||||||||| | |||||| | || |||||||||||| || |||||| |
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| T |
9106998 |
catcaatcaaaaaggaaaaaattctcatctggaaggacacccaccctcaaagcaccctaaa-caccttaacaccctaaaactcaaacaagagctagcgac |
9106900 |
T |
|
| Q |
100 |
accgaaaatggacccgaataa |
120 |
Q |
| |
|
|||||||||||| |||||| |
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|
| T |
9106899 |
gacgaaaatggacctgaataa |
9106879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 12296010 - 12295891
Alignment:
| Q |
2 |
catcaatcaaaaaggaagaaatgctcagcttgaagaacac--accctcacaacaccctaaaaccccttaatagccccaaactcaaacaatagtcagcgac |
99 |
Q |
| |
|
|||| |||||||||||| |||||||||||| |||| |||| ||||||| |||| ||| |||| |||| ||||| |||||||||||| || |||||| |
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|
| T |
12296010 |
catcgatcaaaaaggaaaaaatgctcagctcgaaggacacgtaccctcaaaaca-ccttaaacaacttagcagcccaaaactcaaacaagaggtagcgac |
12295912 |
T |
|
| Q |
100 |
accgaaaatggacccgaataa |
120 |
Q |
| |
|
| |||| ||| |||| ||||| |
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|
| T |
12295911 |
aacgaatatgaaccccaataa |
12295891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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