View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6796_low_26 (Length: 214)
Name: NF6796_low_26
Description: NF6796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6796_low_26 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 8277982 - 8278181
Alignment:
| Q |
15 |
agaatttgtaacttgattgggtggaccagctttgttttttgaagtcagagtattcagggcattaaagcgattggaggcttttggcttaacgttttttgtg |
114 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
8277982 |
agaatttgtaacttaattaggtggaccaactttgttttttgaagtcaaagtattcagggcattaaagcgattggaggctttttgcttaacagtttttgtg |
8278081 |
T |
|
| Q |
115 |
gtaaatgcggtagggctatttggaattttcttttttctagtgacgagcagcgaatcaccatgcaattcattattttcaccatcattgctaattattgtgt |
214 |
Q |
| |
|
||||||| | | ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8278082 |
gtaaatgagatggggctatttggaattttcttttttctagtgacgagcagccaatcaccatgcagttcattattttcaccatcaatgctaattattgtgt |
8278181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 15 - 214
Target Start/End: Original strand, 8306791 - 8306990
Alignment:
| Q |
15 |
agaatttgtaacttgattgggtggaccagctttgttttttgaagtcagagtattcagggcattaaagcgattggaggcttttggcttaacgttttttgtg |
114 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
8306791 |
agaatttgtaacttaattaggtggaccaactttgttttttgaagtcaaagtattcagggcattaaagcgattggaggctttttgcttaacagtttttgtg |
8306890 |
T |
|
| Q |
115 |
gtaaatgcggtagggctatttggaattttcttttttctagtgacgagcagcgaatcaccatgcaattcattattttcaccatcattgctaattattgtgt |
214 |
Q |
| |
|
||||||| | | ||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8306891 |
gtaaatgagatggggctatttggaattttcttttttctagtgacgagcagccaatcaccatacagttcattattttcaccatcaatgctaattattgtgt |
8306990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 7811374 - 7811307
Alignment:
| Q |
143 |
tcttttttctagtgacgagcagcgaatcaccatgcaattcattattttcaccatcattgctaattatt |
210 |
Q |
| |
|
||||||||||||| || |||| | |||||||||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
7811374 |
tcttttttctagtaacaagcaaccaatcaccatgcagctcattatttccctcatcattgctaattatt |
7811307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University