View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6796_low_28 (Length: 201)
Name: NF6796_low_28
Description: NF6796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6796_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 22312997 - 22312805
Alignment:
| Q |
1 |
tcattagcaacttcatagctaaaaa-ccaaaaacaaagaaattcaaacaataaagaatcatatccatataccatacaaaacatccggtttgaaattccca |
99 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22312997 |
tcattagcaacttcatagctaaaaaaccaaaaacaaagaaattcaaacaataaagaatcatatccatataccatacaaaacatccggtttgaaattccca |
22312898 |
T |
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| Q |
100 |
tcttcaatctccttaaatgacttgaatctgaattcatgacacggaatgtcagccagcttgtcatttcttgtcaccttcgaaccaacaccaaac |
192 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
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| T |
22312897 |
tcttcaatctccttaaaggacttgaatctgaattcatgacacggaatgtcagtcagcttgtcatttcttgtcaccttcgaaccaacgccaaac |
22312805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 66 - 164
Target Start/End: Complemental strand, 24232351 - 24232253
Alignment:
| Q |
66 |
tataccatacaaaacatccggtttgaaattcccatcttcaatctccttaaatgacttgaatctgaattcatgacacggaatgtcagccagcttgtcatt |
164 |
Q |
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|||||||||||||||||| |||||||||||||| |||| ||||||||||| ||||| |||||||||||||| || ||||||| || |||||||||||| |
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| T |
24232351 |
tataccatacaaaacatctggtttgaaattcccgtcttggatctccttaaaggacttaaatctgaattcatgccaaggaatgttagtcagcttgtcatt |
24232253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 1964330 - 1964511
Alignment:
| Q |
1 |
tcattagcaacttcatagcta-aaaaccaaaaacaaagaaattcaaacaataaagaatcatatccatataccatacaaaacatccggtttgaaattccca |
99 |
Q |
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|||||| |||||||||||||| ||||| ||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
1964330 |
tcattatcaacttcatagctacaaaacaaaaaacaaagaaattcaaacagcaaagaatcataaccata--ccatacaaaacatccggtttgaaattccca |
1964427 |
T |
|
| Q |
100 |
tcttcaatctccttaaatgacttgaatctgaattcatgacacggaatgtcagccagcttgtcatttcttgtcaccttcgaacca |
183 |
Q |
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| T |
1964428 |
ttttcaattttcttaaaggacttaaatctgaattcatgagacggaatgtctctcagcttatcattccttgtcaccttcgaacca |
1964511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 25459470 - 25459289
Alignment:
| Q |
1 |
tcattagcaacttcatagcta-aaaaccaaaaacaaagaaattcaaacaataaagaatcatatccatataccatacaaaacatccggtttgaaattccca |
99 |
Q |
| |
|
|||||| |||||||||||||| ||||| ||||||||||||||||||||| ||||||| ||| ||||| |||||||||||||||||||| ||||| ||| |
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| T |
25459470 |
tcattatcaacttcatagctacaaaacaaaaaacaaagaaattcaaacagaaaagaataataaccata--ccatacaaaacatccggtttcaaatttcca |
25459373 |
T |
|
| Q |
100 |
tcttcaatctccttaaatgacttgaatctgaattcatgacacggaatgtcagccagcttgtcatttcttgtcaccttcgaacca |
183 |
Q |
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| T |
25459372 |
ttttcaatttccttaaaggacttaaatttgaattcatgagacggaatgtctgtaagcttatcattccttgtcaccttcgaacca |
25459289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 191
Target Start/End: Original strand, 25827622 - 25827709
Alignment:
| Q |
104 |
caatctccttaaatgacttgaatctgaattcatgacacggaatgtcagccagcttgtcatttcttgtcaccttcgaaccaacaccaaa |
191 |
Q |
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||||||||||||||||||| ||||| || |||||| | |||||||||| ||||| ||||| ||||| ||||| | |||| ||||||| |
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| T |
25827622 |
caatctccttaaatgacttaaatctaaagtcatgagaaggaatgtcagtgagcttatcattccttgtgacctttgtaccagcaccaaa |
25827709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 191
Target Start/End: Original strand, 37432154 - 37432280
Alignment:
| Q |
65 |
atataccatacaaaacatccggtttgaaattcccatcttcaatctccttaaatgacttgaatctgaattcatgacacggaatgtcagccagcttgtcatt |
164 |
Q |
| |
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|||||||||| |||||||||| ||| || ||| ||| ||||||||||||||||||| ||||| | |||||| | ||||| |||| ||||| ||| | |
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| T |
37432154 |
atataccatataaaacatccgctttaaataccccttctccaatctccttaaatgacttaaatctacactcatgagaaggaatatcagtgagcttatcact |
37432253 |
T |
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| Q |
165 |
tcttgtcaccttcgaaccaacaccaaa |
191 |
Q |
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||||| ||||| | |||| ||||||| |
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| T |
37432254 |
ccttgtgacctttgtaccagcaccaaa |
37432280 |
T |
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