View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6796_low_3 (Length: 655)
Name: NF6796_low_3
Description: NF6796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6796_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 18 - 653
Target Start/End: Complemental strand, 2588652 - 2588017
Alignment:
| Q |
18 |
ggtatcagaaccctcacatgatgataaaggttttcctagattgtgctcatcacattccacatcataatcatctgtttccacagacgcataactgctttca |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2588652 |
ggtatcagaaccctcacatgatgataaaggtttttctagattgtgctcatcacattccacatcataatcatctgtttccacagacgcataactgctttca |
2588553 |
T |
|
| Q |
118 |
ccaacacaagaagaatttaagaatgattcaggatacatttctcttgccaatctttcttcataatcaataacagcaagccaaatagctgtatccttagcag |
217 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2588552 |
ccaacacaagaagattttaagaatgattcaggatacatttctcttgccaatctttcttcataatcaataacagcaagccaaatagctgtatccttagcag |
2588453 |
T |
|
| Q |
218 |
tgaatctattttgcaggctcctcgaacgtctagcaatactcttaatcttctgaatatttggagacatgtgtttgataatggccgtcaaaacacaaacttt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2588452 |
tgaatctattttgcaggctcctcgaacgtctagcaatactcttaatcttctgaatatttggagacatatgtttgataatggccgtcaaaacacaaacttt |
2588353 |
T |
|
| Q |
318 |
ccaaaccttcttcagatcgtgcggctttttataaggtggtggaccaatatccttactaaatcccatttcgatccaccatggttcgttccctgttggccac |
417 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2588352 |
ccaaaccttcttcagatcgtgcggctttttataaggtggtggaccaatatccttactaaatcccatttcgatccaccatgattcgttccctgttggccac |
2588253 |
T |
|
| Q |
418 |
catggtggaggaatgccgctttccaaaggatgtttcctttgtgatggaccgcagtgttgcattaatgacgatacaattgaacctaatattgtatcaggta |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2588252 |
catggtggaggaatgccgctttccaaaggatgtttcctttgtggtggatcgcagtgttgcattaatgacgatacaattgaacctaatattgtatcaggta |
2588153 |
T |
|
| Q |
518 |
gatcatacaaggaataaggctttacttgctcatcaagcaacatgccattcattgttgaaactccacgttcttcttgatatctagcgattgcagctagacc |
617 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
2588152 |
gatcatacaaggagtaaggctttacttgctcatcaagcaacatgccattcattgttgaaactccacgttcttcttcatatttagcgattgcagctagacc |
2588053 |
T |
|
| Q |
618 |
gtttttctcaaagtttacttggtctttccaccagcc |
653 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
2588052 |
gtttttctcaaagtttacttggtctttccaccagcc |
2588017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 251 - 650
Target Start/End: Complemental strand, 1482743 - 1482343
Alignment:
| Q |
251 |
caatactcttaatcttctgaatatttggagacatgtgtttgataatggccgtcaaaacacaaactttccaaacctt-cttcagatcgtgcggctttttat |
349 |
Q |
| |
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||||| || |||| |||||||| || ||||||||||||||||||| || |||||||| ||| ||| |||||||| || || ||| | | |||| | |
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| T |
1482743 |
caataatcctaattttctgaatgttaggagacatgtgtttgataacaaccttcaaaacataaaattttcaaacctttctacaaatcatatgactttatgc |
1482644 |
T |
|
| Q |
350 |
aaggtggtggaccaatatccttactaaatcccatttcgatccaccatggttcgttccctgttggccaccatggtggaggaatgccgctttccaaaggatg |
449 |
Q |
| |
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|||||||||| | | ||| | |||||| ||||||| ||||||||| ||| || |||| |||||||||||||||||||||| | ||||| ||||||| |
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| T |
1482643 |
aaggtggtgggacgagatcttcgctaaattccatttcattccaccatgattcttttcctgatggccaccatggtggaggaatgtctctttctaaaggata |
1482544 |
T |
|
| Q |
450 |
tttcctttgtgatggaccgcagtgttgcattaatgacgatacaattgaacctaatattgtatcaggtagatcatacaaggaataaggctttacttgctca |
549 |
Q |
| |
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| | ||||||| |||| |||| ||||||||| |||| |||| || |||||||||| |||| |||||||| |||| ||| || |||| ||||| | ||| |
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| T |
1482543 |
tcttctttgtggtggatcgcaatgttgcattcatgatgataaaagtgaacctaatgttgtgtcaggtagttcattcaatgagtaagctgttactggttca |
1482444 |
T |
|
| Q |
550 |
tcaagcaacatgccattcattgttgaaactccacgttcttcttgatatctagcgattgcagctagaccgtttttctcaaagtttacttggtctttccacc |
649 |
Q |
| |
|
|| ||||||| ||||||||||||||| ||| | || |||| || | || ||||||||| ||||||||| ||||| ||||| ||||||||||| |
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| T |
1482443 |
ccattcaacatgtcattcattgttgaaattcctctttaatcttcatgatttgcaattgcagctgcaccgtttttttcaaattttaccctgtctttccacc |
1482344 |
T |
|
| Q |
650 |
a |
650 |
Q |
| |
|
| |
|
|
| T |
1482343 |
a |
1482343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 277 - 504
Target Start/End: Original strand, 4153802 - 4154029
Alignment:
| Q |
277 |
ggagacatgtgtttgataatggccgtcaaaacacaaactttccaaacctt-cttcagatcgtgcggctttttataaggtggtggaccaatatccttacta |
375 |
Q |
| |
|
||||||||||||||||||| | | ||||||| ||| |||||||||||| ||||| ||| ||||||||| ||||||||||||| | | ||| | |||| |
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|
| T |
4153802 |
ggagacatgtgtttgataacatctgccaaaacataaattttccaaacctttcttcaaatcatgcggctttctataaggtggtgggacgagatcttcacta |
4153901 |
T |
|
| Q |
376 |
aatcccatttcgatccaccatggttcgttccctgttggccaccatggtggaggaatgccgctttccaaaggatgtttcctttgtgatggaccgcagtgtt |
475 |
Q |
| |
|
||| ||||||| | || ||| ||| || |||| |||| | ||||||||||||||||| ||| | |||||| | ||||||||| |||| | || |||| |
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|
| T |
4153902 |
aattccatttcatttcatcataattcttttcctgatggctatcatggtggaggaatgcctattt-ctaaggatatctcctttgtggtggatcacaatgtt |
4154000 |
T |
|
| Q |
476 |
gcattaatgacgatacaattgaacctaat |
504 |
Q |
| |
|
||||| |||| |||| || |||||||||| |
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| T |
4154001 |
gcattcatgatgataaaagtgaacctaat |
4154029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 268 - 443
Target Start/End: Complemental strand, 41334910 - 41334735
Alignment:
| Q |
268 |
tgaatatttggagacatgtgtttgataatggccgtcaaaacacaaactttccaaaccttcttcagatcgtgcggctttttataaggtggtggaccaatat |
367 |
Q |
| |
|
|||| ||| |||||||| ||||| |||| || | ||||||| |||| ||||||||||| || | || ||||||||| ||||||| ||| | ||| | |
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|
| T |
41334910 |
tgaacattaggagacatatgtttaataaccgctgccaaaacataaaccttccaaaccttttttatattatgcggctttctataagggggtaggccaggtt |
41334811 |
T |
|
| Q |
368 |
ccttactaaatcccatttcgatccaccatggttcgttccctgttggccaccatggtggaggaatgccgctttccaa |
443 |
Q |
| |
|
| | |||||||| ||| || ||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
41334810 |
cttcactaaatctcatctctttcctccatgattctttccctgttggccaccatggtggaggaatgcctttttccaa |
41334735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 268 - 443
Target Start/End: Complemental strand, 20920289 - 20920114
Alignment:
| Q |
268 |
tgaatatttggagacatgtgtttgataatggccgtcaaaacacaaactttccaaaccttcttcagatcgtgcggctttttataaggtggtggaccaatat |
367 |
Q |
| |
|
|||| ||| |||||||| ||||| |||| || | ||||||| |||| |||||||||||||| |||| ||||||||| ||||||| ||| | ||| | |
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|
| T |
20920289 |
tgaacattaggagacatatgtttaataaccgctgccaaaacataaaccttccaaaccttctttagattatgcggctttctataagggggtaggccaggtt |
20920190 |
T |
|
| Q |
368 |
ccttactaaatcccatttcgatccaccatggttcgttccctgttggccaccatggtggaggaatgccgctttccaa |
443 |
Q |
| |
|
| | |||||||| ||| || ||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
20920189 |
cttcactaaatctcatctcattcctccatgattctttccctgttggccaccatggtggaggaatgcctttttccaa |
20920114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 268 - 443
Target Start/End: Complemental strand, 20901826 - 20901651
Alignment:
| Q |
268 |
tgaatatttggagacatgtgtttgataatggccgtcaaaacacaaactttccaaaccttcttcagatcgtgcggctttttataaggtggtggaccaatat |
367 |
Q |
| |
|
|||| ||| |||||||| ||||| |||| || | ||||||| |||| |||||||||||||| |||| ||||||||| ||||||| || | ||| | |
|
|
| T |
20901826 |
tgaacattaggagacatatgtttaataaccgctgccaaaacataaaccttccaaaccttctttagattatgcggctttctataagggggaaggccaggtt |
20901727 |
T |
|
| Q |
368 |
ccttactaaatcccatttcgatccaccatggttcgttccctgttggccaccatggtggaggaatgccgctttccaa |
443 |
Q |
| |
|
| | |||||||| ||| || ||| ||||| ||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
20901726 |
cttcactaaatctcatctcattcctccatgattctttccctgttggccaccatggtggaggaatgcctttttccaa |
20901651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 277 - 359
Target Start/End: Complemental strand, 38052541 - 38052459
Alignment:
| Q |
277 |
ggagacatgtgtttgataatggccgtcaaaacacaaactttccaaaccttcttcagatcgtgcggctttttataaggtggtgg |
359 |
Q |
| |
|
||||||| ||||||||| || || | ||| ||| ||||||||||| |||| |||| ||| || || ||||||||||||||||| |
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|
| T |
38052541 |
ggagacaagtgtttgatgattgcagccaacacagaaactttccaagcctttttcaaatcatgaggttttttataaggtggtgg |
38052459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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