View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6796_low_4 (Length: 533)
Name: NF6796_low_4
Description: NF6796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6796_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 471; Significance: 0; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 42 - 524
Target Start/End: Complemental strand, 39734613 - 39734131
Alignment:
| Q |
42 |
tagtttctagggaagcaagcttagaacacccttataatagtgtagaggtgagcctctgtgttttctttatttttgtgcttttgtactttctggtctttct |
141 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39734613 |
tagtttctagggaagcaagcttagaacacccttataatagtgtagaggtgagcctctgtgttttctttatttttgtgcttttgtactttctggtctttct |
39734514 |
T |
|
| Q |
142 |
tcaacctttcctgcataaacccattgtacaaaaccagtgcagattttacagaatagaccaacagaaaaagtagaacagaaattaaaagttagtggcaaac |
241 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39734513 |
tcaacctctcctgcataaacccattgtacaaaaccagtgcagattttacagaatagaccaacagaaaaagtagaacagaaattaaaagttagtggcaaac |
39734414 |
T |
|
| Q |
242 |
ataggttggttttattgtcttgaaatactcataaggaacatctcatgagaaataaataattaaagtattggtttaggaaatacttttggtcaggaacagt |
341 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39734413 |
ataggttggttttattgtcttgaaatactcataaggaacatctcatgagaaataaataattaaagtattggtttaggaaatacttttggtcgggaacagt |
39734314 |
T |
|
| Q |
342 |
cattgattgcaatagtcgaatatgacacgcgttcttatatcaatcataaaataaatcagagctctaaacttatttggaagttaaacttgctgcaaaagat |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39734313 |
cattgattgcaatagtcgaatatgacacgcgttcttatatcaatcataaaataaatcagagctctaaacttatttggaagttaaacttgctgcaaaagat |
39734214 |
T |
|
| Q |
442 |
gataggtcgctacctggcttgatttattttgggctctaaagtacgtaagaatatctacttacccttacatggtcagtgatgtc |
524 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39734213 |
gataggtcgctacctggcttgatttattttgggctctaaagtacgtaagaatatctacttacccttacatggtcagcgatgtc |
39734131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 45 - 322
Target Start/End: Complemental strand, 38967140 - 38966859
Alignment:
| Q |
45 |
tttctagggaagcaagcttagaacacccttataatagtgtagaggtgagcctctgtgttttctttatttttgtgcttttgtactttctggtctttcttca |
144 |
Q |
| |
|
||||||| ||||| | |||||||||| |||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||| |||||||||||| |
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|
| T |
38967140 |
tttctagtaaagcatgtttagaacacctttataatagtgtagagatgagcctctgccttttctttatttttgcgcttttgtactttccggtctttcttca |
38967041 |
T |
|
| Q |
145 |
acctttcctgcataaacccattgtacaa--aaccagtgcagattttacagaatagaccaacagaaaaagtagaacagaaattaaaagttagtggcaaaca |
242 |
Q |
| |
|
|| |||| ||||| ||| |||||||| | ||||||||||||| ||||||| |||||||||||||||| || ||||||| ||||||||||||||| |
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| T |
38967040 |
acgactcctacataatcccgttgtacaaatattcagtgcagattttccagaataaaccaacagaaaaagtacaaaagaaattgcaagttagtggcaaacg |
38966941 |
T |
|
| Q |
243 |
taggttggttt--tattgtcttgaaatactcataaggaacatctcatgagaaataaataattaaagtattggtttaggaaat |
322 |
Q |
| |
|
|| || |||| | ||| ||||||||||||||||||||| ||||||||||| ||||||| ||| |||||||||||||||| |
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| T |
38966940 |
gagcttagtttaattttggcttgaaatactcataaggaacttctcatgagaagtaaataaaaaaaatattggtttaggaaat |
38966859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 45 - 276
Target Start/End: Original strand, 39899876 - 39900109
Alignment:
| Q |
45 |
tttctagggaagcaagcttagaacacccttataatagtgtagaggtgagcctctgtgttttctttatttttgtgcttttgtactttctggtctttcttca |
144 |
Q |
| |
|
|||||||||||| || ||||||||||| |||||| || ||||||| |||| | || |||||||||||||||||| || ||||| | |||||||||||| |
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|
| T |
39899876 |
tttctagggaaggaatcttagaacacctttataaaagcatagaggttagccaccgttgtttctttatttttgtgctcttttacttcccggtctttcttca |
39899975 |
T |
|
| Q |
145 |
acctttcctgcataaacccattgtacaaaaccagtgcagattttacagaatagaccaacagaaaaagtagaacagaaattaaaagttagtggcaaacata |
244 |
Q |
| |
|
|||| |||||||||| ||| |||| | || ||||||||||||| ||||||| |||||||||||||||| || |||||| ||||||||||||||| | |
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| T |
39899976 |
acctctcctgcataatcccgttgtccgaattcagtgcagattttccagaataaaccaacagaaaaagtacaatagaaatggcaagttagtggcaaacgga |
39900075 |
T |
|
| Q |
245 |
ggttggttt--tattgtcttgaaatactcataag |
276 |
Q |
| |
|
| ||||||| ||||| ||||||||||| ||||| |
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|
| T |
39900076 |
gcttggtttaatattggcttgaaatactaataag |
39900109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 47 - 213
Target Start/End: Original strand, 39866580 - 39866746
Alignment:
| Q |
47 |
tctagggaagcaagcttagaacacccttataatagtgtagaggtgagcctctgtgttttctttatttttgtgcttttgtactttctggtctttcttcaac |
146 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||||| |||||||| |||| |||||||||||||||||||||| | | | | |||||||||||| |
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|
| T |
39866580 |
tctagggaagcaagcttagatcacctttataatagtgtggaggtgagtctcttccttttctttatttttgtgcttttttccactgagttctttcttcaac |
39866679 |
T |
|
| Q |
147 |
ctttcctgcataaacccattgtacaaaaccagtgcagattttacagaatagaccaacagaaaaagta |
213 |
Q |
| |
|
|| |||||||||||| | ||||| ||| |||||||| || || ||||| | ||||||||||| |||| |
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|
| T |
39866680 |
ctctcctgcataaacgcgttgtataaatccagtgcaaatatttcagaagaaaccaacagaaatagta |
39866746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 46 - 169
Target Start/End: Original strand, 37467933 - 37468056
Alignment:
| Q |
46 |
ttctagggaagcaagcttagaacacccttataatagtgtagaggtgagcctctgtgttttctttatttttgtgcttttgtactttctggtctttcttcaa |
145 |
Q |
| |
|
||||||| ||| ||||| |||||||| ||||||||||||||||||||||||||| ||||| || |||||||||| || | ||| ||| |||||||| || |
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| T |
37467933 |
ttctaggaaaggaagctaagaacacctttataatagtgtagaggtgagcctctgccttttccttctttttgtgctctttttcttcctgttctttctttaa |
37468032 |
T |
|
| Q |
146 |
cctttcctgcataaacccattgta |
169 |
Q |
| |
|
||| |||||||||| ||||||||| |
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|
| T |
37468033 |
cctctcctgcataatcccattgta |
37468056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 159
Target Start/End: Original strand, 39912851 - 39912957
Alignment:
| Q |
53 |
gaagcaagcttagaacacccttataatagtgtagaggtgagcctctgtgttttctttatttttgtgcttttgtactttctggtctttcttcaacctttcc |
152 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||| ||| ||||||||||||||| | |||| ||||| | ||||||||||||||| ||| |
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|
| T |
39912851 |
gaagcaagcttagaacacctttataatagtgtagagttgagcatcttccttttctttatttttgagtttttttacttcccagtctttcttcaacctctcc |
39912950 |
T |
|
| Q |
153 |
tgcataa |
159 |
Q |
| |
|
||||||| |
|
|
| T |
39912951 |
tgcataa |
39912957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 451 - 505
Target Start/End: Original strand, 39900303 - 39900357
Alignment:
| Q |
451 |
ctacctggcttgatttattttgggctctaaagtacgtaagaatatctacttaccc |
505 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
39900303 |
ctacctggcttgatttattttgggccctaaagtacataagaatatctacttaccc |
39900357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 39869284 - 39869360
Alignment:
| Q |
45 |
tttctagggaagcaagcttagaacacccttataatagtgtagaggtgagcctctgtgttttctttatttttgtgctt |
121 |
Q |
| |
|
||||| || |||| |||||| |||||| |||||| | |||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
39869284 |
tttctcggaaagccagcttacaacacctttataaaaatgtagaggtgagtctctgccatttctttatttttgtgctt |
39869360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 39849598 - 39849636
Alignment:
| Q |
47 |
tctagggaagcaagcttagaacacccttataatagtgta |
85 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
39849598 |
tctagggaagcaagcatagaacacctttataatagtgta |
39849636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 21 - 49
Target Start/End: Complemental strand, 30418729 - 30418701
Alignment:
| Q |
21 |
tacaatttgggacggagggagtagtttct |
49 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
30418729 |
tacaatttgggacggagggagtagtttct |
30418701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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