View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6796_low_6 (Length: 474)
Name: NF6796_low_6
Description: NF6796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6796_low_6 |
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| [»] chr4 (7 HSPs) |
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| [»] scaffold0794 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Complemental strand, 11469083 - 11468610
Alignment:
| Q |
1 |
ggtcaaactttgcaaacattcaaaaaagatcaaatatagtaa----gggcatgtgcctaatgtctctacacagttttaannnnnnnnaagtaataatgct |
96 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11469083 |
ggtcaaactt-gcatacattcaaaaaagatcaaatatagtaattaagggcatgtgcctaatgtctctacacagttttaatttttt--aagtaataatgct |
11468987 |
T |
|
| Q |
97 |
tcaagagttcacctcgtgttaattgagacctcaaaacaaagacataaaattaggcaatatctgttctttgtcctggattttgaaatgtatatataagttg |
196 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11468986 |
tcaagagttcacctcgtgttaattgagacctcaaaacaa-gacataaaataaggcaatatctgttctgtgtcctggattttgaaatgtatatataagttg |
11468888 |
T |
|
| Q |
197 |
caaacttgtttatacatacttcatatactacattatattcatcaaaacaacacacacataagacatcaccaaagcttaatctataaaacaaatggatttc |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11468887 |
caaacttgtttatacatacttcatatactacattatattcatcaaaacaacacacacataagacatcaccaaagcttaatctataaaacaaatggatttc |
11468788 |
T |
|
| Q |
297 |
aagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcactcaaatctgctg |
396 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11468787 |
aagagcaatggcagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcactcaaatctgctg |
11468688 |
T |
|
| Q |
397 |
tggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaac |
474 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11468687 |
tggaactaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaac |
11468610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Original strand, 11522378 - 11522851
Alignment:
| Q |
1 |
ggtcaaactttgcaaacattcaaaaaagatcaaatatagtaa----gggcatgtgcctaatgtctctacacagttttaannnnnnnnaagtaataatgct |
96 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11522378 |
ggtcaaactt-gcatacattcaaaaaagatcaaatatagtaattaagggcatgtgcctaatgtctctacacagttttaatttttt--aagtaataatgct |
11522474 |
T |
|
| Q |
97 |
tcaagagttcacctcgtgttaattgagacctcaaaacaaagacataaaattaggcaatatctgttctttgtcctggattttgaaatgtatatataagttg |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
11522475 |
tcaagagttcacctcgtgttaattgagacctcaaaacaa-gacataaaataaggcaatatctgttctgtgtcctggattttgaaatgtatatataagttg |
11522573 |
T |
|
| Q |
197 |
caaacttgtttatacatacttcatatactacattatattcatcaaaacaacacacacataagacatcaccaaagcttaatctataaaacaaatggatttc |
296 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11522574 |
caaacttgtttatacatacttcatatactacattatattcatcaaaacaacacacacataagacatcaccaaagcttaatctataaaacaaatggatttc |
11522673 |
T |
|
| Q |
297 |
aagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcactcaaatctgctg |
396 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11522674 |
aagagcaatggcagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcactcaaatctgctg |
11522773 |
T |
|
| Q |
397 |
tggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaac |
474 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11522774 |
tggaactaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaac |
11522851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 286 - 474
Target Start/End: Complemental strand, 11445826 - 11445638
Alignment:
| Q |
286 |
aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcact |
385 |
Q |
| |
|
||||||||| || |||||||| |||||||||| |||||| |||||||||||||||||| | ||||||||| ||||||||||||||| |||||||||||| |
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| T |
11445826 |
aaatggattccagtagcaatggcagtgaagaaagtcagctatatcatgctcaaatccatctgtacaaacatatatacagctttataaattccatggcact |
11445727 |
T |
|
| Q |
386 |
caaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaac |
474 |
Q |
| |
|
||||||||||||||| ||||| |||| |||||||||||||| |||||||| || |||||| || |||||||||| ||||||||||||| |
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| T |
11445726 |
caaatctgctgtggaactaggcatagctgatgcaatccacaaccatggaaaaccaatgactcttactgaattagcttcatctttgaaac |
11445638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 286 - 474
Target Start/End: Original strand, 11547264 - 11547452
Alignment:
| Q |
286 |
aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcact |
385 |
Q |
| |
|
||||||||| || |||||||| |||||||||| |||| | |||||||||||||||||| | ||||||||| ||||||||||||||| |||||||||||| |
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|
| T |
11547264 |
aaatggattccagtagcaatggcagtgaagaaagtcagttttatcatgctcaaatccatctgtacaaacatatatacagctttataaattccatggcact |
11547363 |
T |
|
| Q |
386 |
caaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaac |
474 |
Q |
| |
|
||||||||||||||| ||||| |||| |||||||||||||| |||||||| || |||||| || |||||||||| ||||||||||||| |
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|
| T |
11547364 |
caaatctgctgtggaactaggcatagctgatgcaatccacaaccatggaaaaccaatgactcttactgaattagcttcatctttgaaac |
11547452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 286 - 474
Target Start/End: Original strand, 11507033 - 11507221
Alignment:
| Q |
286 |
aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcact |
385 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| ||| |||||||| |||||||||||| | ||||||||| ||||| ||||||||| |||||||||||| |
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|
| T |
11507033 |
aaatggatttcagtagcaatggcagtgaagaaaatcaactgtatcacgctcaaatccatctgtacaaacatatatacggctttataaattccatggcact |
11507132 |
T |
|
| Q |
386 |
caaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaac |
474 |
Q |
| |
|
|||||| || ||||| ||||| |||| |||||||||||| || |||||||| || |||||| || |||||||||| ||||||||||||| |
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|
| T |
11507133 |
caaatcagccgtggaactaggcatagcagatgcaatccaaaaccatggaaaaccaatgactcttactgaattagcttcatctttgaaac |
11507221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 311 - 474
Target Start/End: Original strand, 34783870 - 34784033
Alignment:
| Q |
311 |
tgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcactcaaatctgctgtggagctaggaata |
410 |
Q |
| |
|
|||||||| | | ||||||||||||||||||||||| |||||||||||||||| |||| | |||||||||||||||||||| || |||| ||||| ||| |
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|
| T |
34783870 |
tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggcactcaaatcagccatggaactaggcata |
34783969 |
T |
|
| Q |
411 |
gtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaac |
474 |
Q |
| |
|
| ||||||||||| || |||||||| || |||||| || ||||||||||||||||||| |||| |
|
|
| T |
34783970 |
gctgatgcaatccataaccatggaaaaccaatgactctttctgaattagcctcatctttaaaac |
34784033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 311 - 474
Target Start/End: Original strand, 34775649 - 34775812
Alignment:
| Q |
311 |
tgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcactcaaatctgctgtggagctaggaata |
410 |
Q |
| |
|
|||||||| | | ||||||||||||||||||||||| |||||||||||||||| |||| | ||||||||||| |||||||| || |||| ||||| ||| |
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|
| T |
34775649 |
tgaagaaagtgaactgtatcatgctcaaatccatttgtacaaacatgtatacaactttgttagttccatggctctcaaatcagccatggaactaggcata |
34775748 |
T |
|
| Q |
411 |
gtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaac |
474 |
Q |
| |
|
| |||||||| ||||| |||||||| || |||||| || ||||| |||||||||||||||||| |
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|
| T |
34775749 |
gctgatgcaattcacaaccatggaaaaccaatgactctttctgaactagcctcatctttgaaac |
34775812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0794 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: scaffold0794
Description:
Target: scaffold0794; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 286 - 474
Target Start/End: Original strand, 1690 - 1878
Alignment:
| Q |
286 |
aaatggatttcaagagcaatggtagtgaagaaactcagctgtatcatgctcaaatccatttatacaaacatgtatacagctttataagttccatggcact |
385 |
Q |
| |
|
|||||||||||| |||||||| |||||||||| ||| |||||||| |||||||||||| | ||||||||| ||||| ||||||||| |||||||||||| |
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|
| T |
1690 |
aaatggatttcagtagcaatggcagtgaagaaaatcaactgtatcacgctcaaatccatctgtacaaacatatatacggctttataaattccatggcact |
1789 |
T |
|
| Q |
386 |
caaatctgctgtggagctaggaatagtagatgcaatccacaaacatggaaagcctatgactgttcctgaattagcctcatctttgaaac |
474 |
Q |
| |
|
|||||| || ||||| ||||| |||| |||||||||||| || |||||||| || |||||| || |||||||||| ||||||||||||| |
|
|
| T |
1790 |
caaatcagccgtggaactaggcatagcagatgcaatccaaaaccatggaaaaccaatgactcttactgaattagcttcatctttgaaac |
1878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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