View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6797_high_14 (Length: 258)
Name: NF6797_high_14
Description: NF6797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6797_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 43212937 - 43213168
Alignment:
| Q |
1 |
ataaagttatctcatgtattaagatgaattgaacataaaaaccatacctgtaactctttttcatgctccttgagaatcttagcagcacctagaagcatag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43212937 |
ataaagttatctcatgtattaagatgaattgaacataaaaaccatacctgtaactctttttcatgctccttgagaatcttagcagcacctagaagcatag |
43213036 |
T |
|
| Q |
101 |
caacatgagcatcatgaccacatccatgcatctttccaggtactttactcttatgctcccactccaccaattcctgaagttaacaacaacaaaaaatcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43213037 |
caacatgagcatcatgaccacatccatgcatctttccaggtactttactcttatgctcccactccaccaattcctgaagttaacaacaacaaaaaatcat |
43213136 |
T |
|
| Q |
201 |
caacgaatttagagtgaaacaatatatatcct |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
43213137 |
caacgaatttagagtgaaacaatatatatcct |
43213168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 37 - 175
Target Start/End: Complemental strand, 41650781 - 41650643
Alignment:
| Q |
37 |
aaaaaccatacctgtaactctttttcatgctccttgagaatcttagcagcacctagaagcatagcaacatgagcatcatgaccacatccatgcatctttc |
136 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||| |||||||||||| |
|
|
| T |
41650781 |
aaaaaccatacttgtaactctttttcatgttccttgagaatcttagcagcaccaagaagcatagccacgtgagcatcatgaccacatgcatgcatctttc |
41650682 |
T |
|
| Q |
137 |
caggtactttactcttatgctcccactccaccaattcct |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41650681 |
caggtactttactcttatgctcccactccaccaattcct |
41650643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 36 - 184
Target Start/End: Complemental strand, 41655140 - 41654992
Alignment:
| Q |
36 |
taaaaaccatacctgtaactctttttcatgctccttgagaatcttagcagcacctagaagcatagcaacatgagcatcatgaccacatccatgcatcttt |
135 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
41655140 |
taaaaaccatacctgtaactgtttttcatgttccttgaggatcttagcagcaccaagaagcatagcaacatgagcatcatggccacatgcatgcatcttt |
41655041 |
T |
|
| Q |
136 |
ccaggtactttactcttatgctcccactccaccaattcctgaagttaac |
184 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
41655040 |
ccaggcactttactcttatgctcccactccaccaattcctaaggttaac |
41654992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 40 - 203
Target Start/End: Original strand, 43206041 - 43206204
Alignment:
| Q |
40 |
aaccatacctgtaactctttttcatgctccttgagaatcttagcagcacctagaagcatagcaacatgagcatcatgaccacatccatgcatctttccag |
139 |
Q |
| |
|
|||||||| ||||| | ||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
43206041 |
aaccatacatgtaaatgtttttcacggtccttgagaatcttagcagcaccaagaagcatagcaacatgagcatcatgaccacatgcatgcatctttccag |
43206140 |
T |
|
| Q |
140 |
gtactttactcttatgctcccactccaccaattcctgaagttaacaacaacaaaaaatcatcaa |
203 |
Q |
| |
|
|||||||||| ||||||||||||||||||| ||||| | | || |||||||||||| |||||| |
|
|
| T |
43206141 |
gtactttacttttatgctcccactccaccatttcctaacatcaaaaacaacaaaaaaacatcaa |
43206204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 51 - 184
Target Start/End: Original strand, 43223851 - 43223984
Alignment:
| Q |
51 |
taactctttttcatgctccttgagaatcttagcagcacctagaagcatagcaacatgagcatcatgaccacatccatgcatctttccaggtactttactc |
150 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||| |
|
|
| T |
43223851 |
taactgtttttcatgttccttgaggatcttagcagcaccaagaagcatagcaacatgagcatcatggccacatgcatgcatctttccaggcactttactc |
43223950 |
T |
|
| Q |
151 |
ttatgctcccactccaccaattcctgaagttaac |
184 |
Q |
| |
|
||||||||||||||||||||||||| | |||||| |
|
|
| T |
43223951 |
ttatgctcccactccaccaattcctaaggttaac |
43223984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 37 - 175
Target Start/End: Original strand, 43227370 - 43227508
Alignment:
| Q |
37 |
aaaaaccatacctgtaactctttttcatgctccttgagaatcttagcagcacctagaagcatagcaacatgagcatcatgaccacatccatgcatctttc |
136 |
Q |
| |
|
||||||||||| |||||||||||||| |||| |||||| ||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
43227370 |
aaaaaccatacttgtaactctttttcgtgctgcttgaggatctttgcagcaccaagaagcatagcaacatgagcatcatgaccacatgcatgcatctttc |
43227469 |
T |
|
| Q |
137 |
caggtactttactcttatgctcccactccaccaattcct |
175 |
Q |
| |
|
|||||||||| || ||||||||||| |||| |||||||| |
|
|
| T |
43227470 |
caggtactttgcttttatgctcccattccaacaattcct |
43227508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 135
Target Start/End: Complemental strand, 31558638 - 31558552
Alignment:
| Q |
49 |
tgtaactctttttcatgctccttgagaatcttagcagcacctagaagcatagcaacatgagcatcatgaccacatccatgcatcttt |
135 |
Q |
| |
|
|||| |||||||||||| | || |||||||| |||||||| || ||||| | ||||||||||||||||||||| ||||||||||| |
|
|
| T |
31558638 |
tgtatctctttttcatgttgtttaagaatctttgcagcaccaagtagcatggtaacatgagcatcatgaccacacgcatgcatcttt |
31558552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 46 - 175
Target Start/End: Original strand, 5072673 - 5072802
Alignment:
| Q |
46 |
acctgtaactctttttcatgctccttgagaatcttagcagcacctagaagcatagcaacatgagcatcatgaccacatccatgcatctttccaggtactt |
145 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||| |||||||| || ||||| | ||||||||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
5072673 |
acctgtatctctttttcatgctgcttgagaatctttgcagcaccaagtagcatggtaacatgagcatcatgaccacacgcatgcatctttccaggtacct |
5072772 |
T |
|
| Q |
146 |
tactcttatgctcccactccaccaattcct |
175 |
Q |
| |
|
||||| | |||||||||||||||| ||||| |
|
|
| T |
5072773 |
tactcctgtgctcccactccaccatttcct |
5072802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 138
Target Start/End: Original strand, 34595162 - 34595251
Alignment:
| Q |
49 |
tgtaactctttttcatgctccttgagaatcttagcagcacctagaagcatagcaacatgagcatcatgaccacatccatgcatctttcca |
138 |
Q |
| |
|
|||| |||||||||||| | ||||||||||| | |||||| || ||||| |||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
34595162 |
tgtatctctttttcatgttgtttgagaatctttgtagcaccaagtagcatgacaacatgagcatcacgaccacactcatgcatctttcca |
34595251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University