View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6797_low_1 (Length: 775)
Name: NF6797_low_1
Description: NF6797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6797_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 706; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 706; E-Value: 0
Query Start/End: Original strand, 1 - 761
Target Start/End: Complemental strand, 27442489 - 27441718
Alignment:
| Q |
1 |
acagctatggtgtgattctaatggggatgataactggaaaaagagcactcgacgacagccgacaagacaatgtcatcaaccttgctgaatggttcatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
27442489 |
acagctatggtgtgattctaatggggatgataactggaaaaagagcactcgacgacagccaacaagacaatgtcatcaaccttgctgaatggttcatcaa |
27442390 |
T |
|
| Q |
101 |
acagtcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
27442389 |
acagtcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacactgctgtgaa |
27442290 |
T |
|
| Q |
201 |
aaggagcctaataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgc |
300 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27442289 |
aaggagcctaataagcgtcccgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgc |
27442190 |
T |
|
| Q |
301 |
atggtatggacttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagcagcatattagaggataccattcaggaatatta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27442189 |
atggtatggacttgcctatgagtttacctgaagaaatgagcaagtggaagaaccttgaaggaatgagcagcatattagaggataccattcaggaaaatta |
27442090 |
T |
|
| Q |
401 |
ggtgcttggaagaataagaagtagtcaaggacttattttatgataccagttagtgcataatactgcaaggaattcattttgatgattttccctgaatatt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27442089 |
ggtgcttggaagaataagaagtagtcaaggacttattttatgataccagttagtgcataatactgcaaggaattcattttgatgattttccctgaatatt |
27441990 |
T |
|
| Q |
501 |
attttgatgctcataagatgcttagtaaaattcatctctggtgctagtgttgatggttttgatgagggagcttccttcatttgttattgtatttgctaaa |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27441989 |
attttgatgctcataagatgcttagtaaaattcatctctggtgctagtgttgatggttttgatgagggagcttccttcatttgttattgtatttgctaaa |
27441890 |
T |
|
| Q |
601 |
gattttctttagctttctagtatttcttatatggaaatacataaaagctttattgttggtatttcttataagaattctattggacttctggac------- |
693 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27441889 |
gattttctttagctttctagtatttcttatatggaaatacataaaagctttattgttggtatttcttataagaattctattggacttctggactcctaca |
27441790 |
T |
|
| Q |
694 |
----tctactaaggaagagttgagttgaaaatcttcattgtagatttattctcttgatctttcttcagtgat |
761 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27441789 |
tccatccactaaggaagagttgagttgaaaatcttcattgtagatttattctcttgatctttcttcagtgat |
27441718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 8e-57; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 105 - 369
Target Start/End: Original strand, 11838064 - 11838328
Alignment:
| Q |
105 |
tcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaagg |
204 |
Q |
| |
|
||||||||||| |||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||| |||||| || || || |||| || || |
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|
| T |
11838064 |
tcatttgaaaaggtcattgatccagcaatggacatcgacgaggaaggcttggagagtttcaggactattgcaggattggctagccactgttgtgcaaggg |
11838163 |
T |
|
| Q |
205 |
agcctaataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatgg |
304 |
Q |
| |
|
|||||||| ||| || |||||| || ||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| ||||| || |||| |
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|
| T |
11838164 |
agcctaatcagcgtcctgacatgggacacgtagtgaatgtgctagcaccccttgtcgagatttggaagccggctgaacctgatgttgatgatatatatgg |
11838263 |
T |
|
| Q |
305 |
tatggacttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
369 |
Q |
| |
|
|| |||||| ||||||||| ||| ||| | ||| ||||||| |||| | |||||||||||||| |
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|
| T |
11838264 |
gattgacttggatatgagtttgcctcaagcactgattaagtggcagaatcatgaaggaatgagca |
11838328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 111 - 369
Target Start/End: Complemental strand, 11855769 - 11855511
Alignment:
| Q |
111 |
gaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaaggagccta |
210 |
Q |
| |
|
||||| |||||||||||||||||| | || ||||||||||||||||||||||||||| ||| ||||||||||||| || ||||||| || ||||||| |
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| T |
11855769 |
gaaaaggtcattgatccagcaatggacatcaacgaggaaggcttggagagtttcaggatcatttcagaattggcaagccactgctgtgcaagggagcctc |
11855670 |
T |
|
| Q |
211 |
ataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatggtatgga |
310 |
Q |
| |
|
|| ||| || ||| ||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||| || || |
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| T |
11855669 |
atcagcgtcccgatatgggatacgtagtgaatgtgttagcacctcttgttgagatttggaagccggctgaacctaatgctgatgacatgtatgggattga |
11855570 |
T |
|
| Q |
311 |
cttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
369 |
Q |
| |
|
|||| |||| |||| ||| ||| | |||||||| | |||| |||||||||||||||| |
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|
| T |
11855569 |
cttgtatatgggtttgcctcaagcaccgagtaagttgcagaatcttgaaggaatgagca |
11855511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 105 - 369
Target Start/End: Original strand, 11850747 - 11851011
Alignment:
| Q |
105 |
tcatttgaaaatgtcattgatccagcaatgaaaatggacgaggaaggcttggagagtttcaggactattgcagaattggcaagacaatgctgtgaaaagg |
204 |
Q |
| |
|
||||| ||||| |||||||||||||||||| | || |||||||||||| ||||||||||||||||||| |||| ||||||||| ||||| |||| || || |
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|
| T |
11850747 |
tcattcgaaaaggtcattgatccagcaatggacatagacgaggaaggcctggagagtttcaggactatggcaggattggcaagccaatgttgtgcaaggg |
11850846 |
T |
|
| Q |
205 |
agcctaataagcatcgcgacatgcgatacgtagtccatgtgctagcacctcttgttgagatttggaagccggctgaacctgatgccgatgacatgcatgg |
304 |
Q |
| |
|
||||| || ||| || |||||| || | ||||| ||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||| |||| |
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|
| T |
11850847 |
agcctcatcagcgtcctgacatgggacatgtagtgaatgtgctagcacctcttgtcgagatttggaagccggctgaacctgaagctgatgacatgtatgg |
11850946 |
T |
|
| Q |
305 |
tatggacttgcctatgagtttacctgaagaaatgagtaagtggaagaaccttgaaggaatgagca |
369 |
Q |
| |
|
|| |||||| ||| ||||| ||| ||| | | ||||||||| ||| |||||||||| ||||| |
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|
| T |
11850947 |
gattgacttggatataagttttcctcaaggacttagtaagtggccgaatcttgaaggaacgagca |
11851011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 542 - 684
Target Start/End: Complemental strand, 18704478 - 18704337
Alignment:
| Q |
542 |
tgctagtgttgatggttttgatgagggagcttccttcatttgttattgtatttgctaaagattttctttagctttctagtatttcttatatggaaataca |
641 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||| |||||||||||| |||| |||| |||||||| |||| ||| ||||||||||||| |||||| |
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|
| T |
18704478 |
tgctagtgttgatggttttgttaagggagcttccttcttttgttattgtaattgcagaagaatttctttacctttttagcatttcttatatgg-aataca |
18704380 |
T |
|
| Q |
642 |
taaaagctttattgttggtatttcttataagaattctattgga |
684 |
Q |
| |
|
| | ||||| | ||||| |||| |||||||||||||||||||| |
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|
| T |
18704379 |
tcacagcttcaatgttgatattccttataagaattctattgga |
18704337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 542 - 698
Target Start/End: Complemental strand, 35268891 - 35268736
Alignment:
| Q |
542 |
tgctagtgttgatggttttgatgagggagcttccttcatttgttattgtatttgctaaagattttctttagctttctagtatttcttatatggaaataca |
641 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||| ||||||||| || | || |||| |||||||| |||| ||||||||||||||||| |||||| |
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|
| T |
35268891 |
tgctggtgttgatggttttgttgagggagcttccttcttttgttattataatcgcagaagaatttctttacctttttagtatttcttatatgg-aataca |
35268793 |
T |
|
| Q |
642 |
taaaagctttattgttggtatttcttataagaattctattggacttctggactctac |
698 |
Q |
| |
|
| | ||||| | ||||| |||| |||||||||||||||||||| || |||| ||||| |
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|
| T |
35268792 |
tcacagcttcaatgttgatattccttataagaattctattggatttgtggagtctac |
35268736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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