View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6797_low_11 (Length: 299)
Name: NF6797_low_11
Description: NF6797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6797_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 29135262 - 29135529
Alignment:
| Q |
13 |
aatatggtaattcgatcttattgcaataaaatagtttaattattcacccaaattttgtagtagcggtgttacgaggcaaccttatcaagtggtcgaagag |
112 |
Q |
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| T |
29135262 |
aatatggtaattcgatcttattgcaatgaaatagtttaattgttcacccaaattttgtagtagcggtgttacgaggcaaccttatcaagtggtcgaagag |
29135361 |
T |
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| Q |
113 |
gctcttaatgtgtttgacaataatgtgggttatgccaactagcttattctttagttctcaattccatgaatggtataataggttgaggttttataggggc |
212 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |||||| |
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| T |
29135362 |
gctcttaatgtgtttgactataatgtgggttatgccaactagcttattctttagttctcaattccatgaatggtgtaataggttgaggtcttaaaggggc |
29135461 |
T |
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| Q |
213 |
taaatattcaaactgaccaagtgtgcaagagataataggaaatcaaccattgaacacgttgtaagata |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29135462 |
taaatattcaaactgaccaagtgtgcaagagataataggaaatcaaccattgaacacgttgtaagata |
29135529 |
T |
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