View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6797_low_15 (Length: 251)
Name: NF6797_low_15
Description: NF6797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6797_low_15 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 3285120 - 3285370
Alignment:
| Q |
1 |
tggggttatttatgatagagtttttatttttaggttcaaataatcatgacaaatnnnnnnngttggtcagatagtaaattcagatttgacaattgacaag |
100 |
Q |
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| T |
3285120 |
tggggttatttatgatagagtttttatttttaggttcaaataatcatgacaaataaaaaaagttggtcagatactaaattcagatttgacaattgacaag |
3285219 |
T |
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| Q |
101 |
gtttttaagttttaacttcttccatcaaccaattgggaattgatgaataatcatgaatagaatctacaacacattaagttactatcgcatctctttacca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3285220 |
gtttttaagttttaacttcttccatcaaccaattgggaattgatgaataatcatgaatagaatctacaacacattaagttactattgcatctctttacca |
3285319 |
T |
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| Q |
201 |
aaatgaagaaaagcttaagcatactagtatgaaagtttgacaaattcaagg |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3285320 |
aaatgaagaaaagcttaagcatactagtatgaaagtttgacaaattcaagg |
3285370 |
T |
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