View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6797_low_16 (Length: 243)
Name: NF6797_low_16
Description: NF6797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6797_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 219
Target Start/End: Original strand, 8796798 - 8797015
Alignment:
| Q |
2 |
tgagatgaagtgtctttatcatctatgcttaaaagggttttgacttacaataatatacatgatagtttgtcaatattagtaataaatggaaatgaaaaca |
101 |
Q |
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| T |
8796798 |
tgagatgaagtgtctttatcacatatgcttaaaagggttttgacttacaataatatacatgatagtttgtcaatattagtaataaatggaaatgaaaaca |
8796897 |
T |
|
| Q |
102 |
aaaggccacagtttcaaagtacaattatacaacacagctcatcagatccaaacttgtcaaacnnnnnnngtacaaagaaattaattacacacacatcgtt |
201 |
Q |
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| T |
8796898 |
aaaggccacagtttcaaagtacaattatacaacacagctcatcagatccaaacttgtcaaacaaaaaaagtacaaagaaattaattacacacacatcgtt |
8796997 |
T |
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| Q |
202 |
ttcaaaataattatcttc |
219 |
Q |
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|||||||||||||||||| |
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| T |
8796998 |
ttcaaaataattatcttc |
8797015 |
T |
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