View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6797_low_2 (Length: 706)
Name: NF6797_low_2
Description: NF6797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6797_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 602; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 602; E-Value: 0
Query Start/End: Original strand, 12 - 695
Target Start/End: Complemental strand, 5414258 - 5413565
Alignment:
| Q |
12 |
gacatcatataccgcattagaaactacataaccagtcatgactgcatccattaagtgatagcggatgcagaaggttgtagcagaagggagagtgggcagg |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5414258 |
gacatcatataccgcattagaaactacataaccagtcatgactgcatccattaagtgatagcggatgcagaaggttgtagcagaagggagagtgggcagg |
5414159 |
T |
|
| Q |
112 |
ggtaggggcagagaccgtagtactgatagatctgaaccatctcaggtgcacgagtctgagctccaaccccaacaacaccatgttgaggaggaggatgatg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5414158 |
ggtaggggcagagaccgtagtactgatagatctgaaccatctcaggtgcacgagtatgagctccaaccccaacaacaccatgttgaggaggaggatgatg |
5414059 |
T |
|
| Q |
212 |
attcagataattcagaggaagaggcgaatgacgatgatgagcacccacaacatgtggagaaggagtcacaaccgctgaataccaatcctggtggcccagg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5414058 |
attcagataattcagaggaagaggcgaatgacgatgatgagcacccacaatatgtggagaaggagtcacaactgctgaataccaatcctggtggcccagg |
5413959 |
T |
|
| Q |
312 |
tgcatgtttgctggagtagtaagattcttcaacttatattttttgtattgtgttttacttatttatgtaaaccgatannnnnnngtttgtatcaatggcg |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
5413958 |
tgcatgtttgctggagtagtaagattcttcaacttatattttttgtactgtgttttacttatttatgtaaaccgatatttttttgtttgtatcaatggcg |
5413859 |
T |
|
| Q |
412 |
taacaatttaaaatctgtgaacaacgagaagaagttgaaggctatacgtgattcaaataaggtgtggacgtgtcagacatggttcagagatgtcgtacaa |
511 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5413858 |
taacaatttaaaatgtgtgaacaacgagaagaagttgaaggctatacgtgattcaaataaggtgtggacgtgtcagacatggttcagagatgtcgtacaa |
5413759 |
T |
|
| Q |
512 |
gtcagtggtttttactagctcaagcatgttagctataacattattaaccacaactcg----------ttgttaagagctggcacaagtagatttccagtt |
601 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
5413758 |
gtcagtggtttttactagctcaagcatgttagctataacattattaaccatagctcgttgtctgaatttgttaagagctggcacgagtagatttccagtt |
5413659 |
T |
|
| Q |
602 |
tccatctttcgattggggagattacaataacactggataatgtgtcatgtctgatgcatctccccgtcgaggaccgcctcatggactttgatgt |
695 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5413658 |
tccatctttcgattggggagattacaataacactggataatgtgtcatgtctgatgcatctcccagtcgaggaccgcctcatggactttgatgt |
5413565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 483 - 565
Target Start/End: Complemental strand, 9716759 - 9716677
Alignment:
| Q |
483 |
gtcagacatggttcagagatgtcgtacaagtcagtggtttttactagctcaagcatgttagctataacattattaaccacaac |
565 |
Q |
| |
|
||||| ||||||| |||||| | |||||| ||||| ||||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
9716759 |
gtcagccatggtttagagattccctacaagatcgtggtctttactagctcaagcatgttagctataacattaatgaccacaac |
9716677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 601 - 671
Target Start/End: Original strand, 21118260 - 21118330
Alignment:
| Q |
601 |
ttccatctttcgattggggagattacaataacactggataatgtgtcatgtctgatgcatctccccgtcga |
671 |
Q |
| |
|
|||||| |||||||| |||||| ||||| ||||| ||| ||||||||||| || ||||||||||| |||| |
|
|
| T |
21118260 |
ttccatttttcgattaaggagataacaatgacacttgatgatgtgtcatgtttgctgcatctccccatcga |
21118330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 601 - 669
Target Start/End: Complemental strand, 39469115 - 39469047
Alignment:
| Q |
601 |
ttccatctttcgattggggagattacaataacactggataatgtgtcatgtctgatgcatctccccgtc |
669 |
Q |
| |
|
|||| ||||||||| ||||||| ||||| ||||| ||||||||||||||| || |||||||||||||| |
|
|
| T |
39469115 |
ttccgtctttcgatgagggagatgacaatgacacttgataatgtgtcatgtttgttgcatctccccgtc |
39469047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 590 - 664
Target Start/End: Complemental strand, 43453237 - 43453163
Alignment:
| Q |
590 |
agatttccagtttccatctttcgattggggagattacaataacactggataatgtgtcatgtctgatgcatctcc |
664 |
Q |
| |
|
||||||| || ||||||||| || |||||||||| ||||| ||||| ||| ||||||||||| || ||||||||| |
|
|
| T |
43453237 |
agatttcaagcttccatcttccgtttggggagatgacaatgacacttgatgatgtgtcatgtttgttgcatctcc |
43453163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 613 - 671
Target Start/End: Original strand, 26184020 - 26184078
Alignment:
| Q |
613 |
attggggagattacaataacactggataatgtgtcatgtctgatgcatctccccgtcga |
671 |
Q |
| |
|
||||||||||| ||| | ||||||||| ||||| |||||||| ||||||||| |||||| |
|
|
| T |
26184020 |
attggggagatgacattgacactggatgatgtgccatgtctgctgcatctccacgtcga |
26184078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 510 - 565
Target Start/End: Original strand, 1781319 - 1781374
Alignment:
| Q |
510 |
aagtcagtggtttttactagctcaagcatgttagctataacattattaaccacaac |
565 |
Q |
| |
|
||||||||||| |||||| |||||||||||| ||| ||||||| ||| |||||||| |
|
|
| T |
1781319 |
aagtcagtggtctttactggctcaagcatgtgagcaataacataattgaccacaac |
1781374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 127 - 199
Target Start/End: Original strand, 40570143 - 40570215
Alignment:
| Q |
127 |
cgtagtactgatagatctgaaccatctcaggtgcacgagtctgagctccaaccccaacaacaccatgttgagg |
199 |
Q |
| |
|
|||||||| ||| |||||| |||||||| ||||||||| |||| | | | ||||||||||||| |||||||| |
|
|
| T |
40570143 |
cgtagtaccgatggatctggaccatctctagtgcacgagactgaacccgagccccaacaacaccgtgttgagg |
40570215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University