View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6797_low_5 (Length: 366)
Name: NF6797_low_5
Description: NF6797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6797_low_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 2 - 272
Target Start/End: Complemental strand, 32982547 - 32982277
Alignment:
| Q |
2 |
caataaatgaagggtcagagaatgcaagagaggtacttgaagaagttggtaaggaaaatgtggaaactgcatgggatgcaacaaagaaaactgtacaatt |
101 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32982547 |
caataaatcaagggtcagagaatgcaagagaggtacttgaagaagttggtaaggaaaatgtggaaactgcatgggatgcaacaaagaaaactgtacaatt |
32982448 |
T |
|
| Q |
102 |
ggtgacagagacaaccacagctgaggctgatatgaatgttgtggacactgcggagtatagaagtagtgaagatttatcagggcaacttggagatggctgt |
201 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32982447 |
ggtgactgagacaaccacagctgaggctgatatgaatgttgtggacactgtggagtatagaagtagtgaagatttatcagggcaacttggagatggctgt |
32982348 |
T |
|
| Q |
202 |
gataagattcagttataattaatacatataggaattaataagagggtaatcccatcccatatctcctatgc |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32982347 |
gataagattcagttataattaatacatataggaattaataagagggtaatcccatcccatatctcctatgc |
32982277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 38 - 157
Target Start/End: Complemental strand, 27038071 - 27037952
Alignment:
| Q |
38 |
ttgaagaagttggtaaggaaaatgtggaaactgcatgggatgcaacaaagaaaactgtacaattggtgacagagacaaccacagctgaggctgatatgaa |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27038071 |
ttgaagaagttggtaaggaaaatgtggaaactgcatgggatgctacaaagaacactgtacaattggtgacagagacaaccactgctgaggctgatatgaa |
27037972 |
T |
|
| Q |
138 |
tgttgtggacactgcggagt |
157 |
Q |
| |
|
|| |||||||||||||||| |
|
|
| T |
27037971 |
tgccgtggacactgcggagt |
27037952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University