View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6797_low_6 (Length: 360)
Name: NF6797_low_6
Description: NF6797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6797_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 24 - 340
Target Start/End: Original strand, 43213278 - 43213594
Alignment:
| Q |
24 |
ttgcatgcatgtggaaagtaataataattgaaaaccaaaacattcagaaagtaaaaatgtggacttacgtacctgcataagaagagcatccatgtcagct |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43213278 |
ttgcatgcatgtggaaagtaataataattgaaaaccaaaacattcagaaagtaaaaatgtggacttacgtacctgcataagaagagcatccatctcagct |
43213377 |
T |
|
| Q |
124 |
ctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtttatattgaacacccaactcatccaattttg |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | ||||| || ||||| ||||||| |
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| T |
43213378 |
ctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactacaactggatgtttatatgggacacctaattcatctaattttg |
43213477 |
T |
|
| Q |
224 |
ttcttataagcttactggtttcaaattcttcataaccaacttcaggattctcatgaatcttcctccttatatcaaccatccaatcaaaaactcgaggctc |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43213478 |
ttcttataagcttactggtttcaaattcttcataaccaacttcaggattctcatgaatcttcctccttatatcaaccatccaatcaaaaacttgaggctc |
43213577 |
T |
|
| Q |
324 |
tttggctaattccagaa |
340 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
43213578 |
tttggctaattccagaa |
43213594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 25 - 338
Target Start/End: Complemental strand, 41654884 - 41654571
Alignment:
| Q |
25 |
tgcatgcatgtggaaagtaataataattgaaaaccaaaacattcagaaagtaaaaatgtggacttacgtacctgcataagaagagcatccatgtcagctc |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
41654884 |
tgcatgcatgtggaaagtaataataattgaaaaccaaaacattcagaaagtaaaaatgtggacctacgtacctgcataagaagagcatccatttcagctc |
41654785 |
T |
|
| Q |
125 |
taagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtttatattgaacacccaactcatccaattttgt |
224 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||| |
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| T |
41654784 |
tgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtttatatgtaacacccaattcatccaattttgt |
41654685 |
T |
|
| Q |
225 |
tcttataagcttactggtttcaaattcttcataaccaacttcaggattctcatgaatcttcctccttatatcaaccatccaatcaaaaactcgaggctct |
324 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
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| T |
41654684 |
tcttataagcttactggtctcaaattcttcataaccaagttcaggattctcatgaatcttcctccttatatcaaccatccaatcaaaaacttgaggttcc |
41654585 |
T |
|
| Q |
325 |
ttggctaattccag |
338 |
Q |
| |
|
|||||||||||||| |
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|
| T |
41654584 |
ttggctaattccag |
41654571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 94 - 338
Target Start/End: Original strand, 43224083 - 43224327
Alignment:
| Q |
94 |
acctgcataagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
193 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
43224083 |
acctgcatgagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
43224182 |
T |
|
| Q |
194 |
tatattgaacacccaactcatccaattttgttcttataagcttactggtttcaaattcttcataaccaacttcaggattctcatgaatcttcctccttat |
293 |
Q |
| |
|
||||||||||||| || |||||||||| ||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
43224183 |
tatattgaacacctaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttat |
43224282 |
T |
|
| Q |
294 |
atcaaccatccaatcaaaaactcgaggctctttggctaattccag |
338 |
Q |
| |
|
|||||||||||||||||||||| |||| || |||||||||||||| |
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|
| T |
43224283 |
atcaaccatccaatcaaaaacttgaggttccttggctaattccag |
43224327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 94 - 341
Target Start/End: Original strand, 43227884 - 43228131
Alignment:
| Q |
94 |
acctgcataagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
193 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43227884 |
acctgcatgagaagagcatccatgtcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
43227983 |
T |
|
| Q |
194 |
tatattgaacacccaactcatccaattttgttcttataagcttactggtttcaaattcttcataaccaacttcaggattctcatgaatcttcctccttat |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||| | |||||||||||||||||| || |||||||| |
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|
| T |
43227984 |
tatattgaacacccaactcatccaattttgttcttataagcttactagtctcaaattcttgataactcagttcaggattctcatgaatttttctccttat |
43228083 |
T |
|
| Q |
294 |
atcaaccatccaatcaaaaactcgaggctctttggctaattccagaaa |
341 |
Q |
| |
|
| ||||||||| ||||||||| ||||||||| ||||| || ||||| |
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|
| T |
43228084 |
agaaaccatccagtcaaaaactttaggctctttagctaaatctagaaa |
43228131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 94 - 341
Target Start/End: Original strand, 43206374 - 43206621
Alignment:
| Q |
94 |
acctgcataagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
193 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43206374 |
acctgaataagaagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
43206473 |
T |
|
| Q |
194 |
tatattgaacacccaactcatccaattttgttcttataagcttactggtttcaaattcttcataaccaacttcaggattctcatgaatcttcctccttat |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||| | |||||||||||||||||| || |||||||| |
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|
| T |
43206474 |
tatattgaacacccaactcatccaattttgttcttataagcttactagtctcaaattcttgataactcagttcaggattctcatgaatttttctccttat |
43206573 |
T |
|
| Q |
294 |
atcaaccatccaatcaaaaactcgaggctctttggctaattccagaaa |
341 |
Q |
| |
|
| ||||||||| ||||||||| ||||||||| ||||| || ||||| |
|
|
| T |
43206574 |
agaaaccatccagtcaaaaactttaggctctttagctaaatctagaaa |
43206621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 93 - 320
Target Start/End: Complemental strand, 41650276 - 41650049
Alignment:
| Q |
93 |
tacctgcataagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgt |
192 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
41650276 |
tacctgcatgagaagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgt |
41650177 |
T |
|
| Q |
193 |
ttatattgaacacccaactcatccaattttgttcttataagcttactggtttcaaattcttcataaccaacttcaggattctcatgaatcttcctcctta |
292 |
Q |
| |
|
|||||| | ||||| || |||||||||||||||| |||||||||||| |||| |||||||| ||||| | |||||||||||||||||| || ||||||| |
|
|
| T |
41650176 |
ttatatgggacacctaattcatccaattttgttcgtataagcttactagttttaaattcttgataactcagttcaggattctcatgaatttttctcctta |
41650077 |
T |
|
| Q |
293 |
tatcaaccatccaatcaaaaactcgagg |
320 |
Q |
| |
|
|||||||||| ||||||||||| |||| |
|
|
| T |
41650076 |
tatcaaccatgaaatcaaaaacttgagg |
41650049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 94 - 314
Target Start/End: Original strand, 5073616 - 5073836
Alignment:
| Q |
94 |
acctgcataagaagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtt |
193 |
Q |
| |
|
||||||||| |||||||||||| |||||||| | ||| |||||||||| | |||||||||||| ||||||| ||||| || | ||||||||||| || |
|
|
| T |
5073616 |
acctgcatagaaagagcatccatatcagctcttaaagcaacaaaaggagacaatccagttcctatgaaaccaatgacaccagtgattgcaactggatatt |
5073715 |
T |
|
| Q |
194 |
tatattgaacacccaactcatccaattttgttcttataagcttactggtttcaaattcttcataaccaacttcaggattctcatgaatcttcctccttat |
293 |
Q |
| |
|
|||| ||| || || | |||||||| ||||||||| | | ||| || |||||||| |||||||| | ||| |||||||||||||| ||||| || || |
|
|
| T |
5073716 |
tatagggaatactcagtttatccaattctgttcttatcaattcacttgtctcaaattcctcataacccaattctggattctcatgaattttccttctgat |
5073815 |
T |
|
| Q |
294 |
atcaaccatccaatcaaaaac |
314 |
Q |
| |
|
|| | |||||||||| |||| |
|
|
| T |
5073816 |
attgatcatccaatcataaac |
5073836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 142
Target Start/End: Original strand, 31839458 - 31839492
Alignment:
| Q |
108 |
agcatccatgtcagctctaagagcgacaaaaggag |
142 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
31839458 |
agcatccatgtcagctctaagagcaacaaaaggag |
31839492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 26262888 - 26262851
Alignment:
| Q |
108 |
agcatccatgtcagctctaagagcgacaaaaggaggaa |
145 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||| |
|
|
| T |
26262888 |
agcatccatgtcagctctaagagcaacaaatggaggaa |
26262851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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