View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6797_low_7 (Length: 358)
Name: NF6797_low_7
Description: NF6797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6797_low_7 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 218 - 358
Target Start/End: Complemental strand, 18629671 - 18629531
Alignment:
| Q |
218 |
accgcacaaccatcaccttcagaaacacaagccctccttaaactaaaacaatctttaataaacgcagacaaaatcttgtcaacatggataccaaacgtct |
317 |
Q |
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| T |
18629671 |
accgcacaaccatcaccttcagaaacacaagccctccttaaactaaaacaatctttaataaactcagacaaaatcttgtcaacatggataccaaacgtct |
18629572 |
T |
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| Q |
318 |
ctccatgttccggtacgtggatcggtgttatttgcttcgac |
358 |
Q |
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| T |
18629571 |
ctccatgttccggtacgtggatcggtgttatttgcttcgac |
18629531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 18629789 - 18629713
Alignment:
| Q |
97 |
ttaacctctccgaccaacggtctccaaacatcctcggcagctggcaaaacaaccaatggccactgctgccaacagca |
173 |
Q |
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| T |
18629789 |
ttaacctctccgaccaacggtctccaaacatcctcggcagctggcaaaacaaccaatggccactgctgccaacagca |
18629713 |
T |
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