View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6797_low_8 (Length: 349)
Name: NF6797_low_8
Description: NF6797
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6797_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 37046689 - 37047026
Alignment:
| Q |
1 |
aatatatttctcctaaatttcaggttctatannnnnnnnccagtcttcctctatgcctcctaggattagaaaattttaaaaacaattgcgtttttatttt |
100 |
Q |
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| T |
37046689 |
aatatattcttcctaaatttcaggttctacattttttttccaatcttcctctatgctctctaggattagaaaattttaaaaacaattacgtttttatttt |
37046788 |
T |
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| Q |
101 |
ccttggacctattttactgtgttagttaatttcgaattacactcacaagtttattcaataggccacattacaatttttaattgaacaagttaacaaacgg |
200 |
Q |
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| T |
37046789 |
accggaacctatt----------agttaatttcgaattacactcacaagtttattcaatgggtcacattacaatttttaattgaacaagttaacaaacgg |
37046878 |
T |
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| Q |
201 |
agtactttgactttgtnnnnnnnnnnnntggacta-attgacaaaaatattataccaccagagttatatttgacaattcgtaaagttcaatatttgtttt |
299 |
Q |
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| T |
37046879 |
actactttgactttgtaaaaaaaaaa--tggactacattgacaaacatattataccaccggagtcatatttgacaattagtaaagttcaatatttgtttt |
37046976 |
T |
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| Q |
300 |
gattaatacttacaattttaagaaccattttatcttttttcgtgagttta |
349 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
37046977 |
gattaatacttacaattttaagaaccattttatctattttcgtgagttta |
37047026 |
T |
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