View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6802_high_2 (Length: 568)
Name: NF6802_high_2
Description: NF6802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6802_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 380
Target Start/End: Complemental strand, 33387837 - 33387481
Alignment:
| Q |
20 |
atctggcattagcatcaagacctgcaatgcaataatggtaaaaatgaagctagaaaagttgtcactcacaaataaatgttgctacttattttgcttcaaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33387837 |
atctggcattagcatcaagacctgcaatgcaataatggtaaaaatgaagctagaaaagttgtcactcacaaataaatgttgctacttattttgcttcaaa |
33387738 |
T |
|
| Q |
120 |
ggttcacttccttctagcaattgatggagtgtacacaatcaaggaaaccgtggatgcatgtcttcttttatcgtacagctacacataacacatttagttt |
219 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33387737 |
ggttcacttccttctagcatttgatggagtgtacacaatcaaggaaaccgtgcatggatgtcttcttttatcgtacagctacacatgacacatttagttt |
33387638 |
T |
|
| Q |
220 |
ggtattgtatcccatggttatgtaaattaattaaaactggtagctagagagacaaccataaaacaattgatcgagtttacatatatttgttgcttcctga |
319 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33387637 |
ggtattgtatcccatggttatgtaaa----ttaaaactggtagctagagagacaaccataaaacaattgatcgagtttacatatatttgttgcttcctga |
33387542 |
T |
|
| Q |
320 |
gggttcgtgattaatgtatcaatttttaatgcataatttcagttttgaatattcttccata |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33387541 |
gggttcgtgattaatgtatcaatttttaatgcataatttcagttttgaatattcttacata |
33387481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 493 - 555
Target Start/End: Complemental strand, 33387476 - 33387414
Alignment:
| Q |
493 |
cagcaagtaatatcaatgttgcggctaaaagctattgcagatttttagtagttgatatcttga |
555 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
33387476 |
cagcaagtaatatcaatgttgcggctaaaagctattgcagatttttagtagttgatagcttga |
33387414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University