View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6802_high_4 (Length: 447)
Name: NF6802_high_4
Description: NF6802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6802_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 2e-87; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 25567908 - 25568130
Alignment:
| Q |
11 |
acatcatcaattgagaagagactgatgtgagatggattataacatttatatttcctttttacccttgttcttttgtttaaccctcgttcacaagaaaatg |
110 |
Q |
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| T |
25567908 |
acatcatcaattcagaagagactgatgtgagatggattataacatttatatttcctttttacccttgttcttttgtttaaccctcgttcacaagaaaatg |
25568007 |
T |
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| Q |
111 |
aatcatgataattgattgaaatataagtaaaaactaatgaagaatttttaggtccaaaaatcgaactcaannnnnnnnaaaataattcgctttgtgtgta |
210 |
Q |
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| T |
25568008 |
aatcatgataattgattgaaatataagtaaaatctaacgaagaatttttacgtccaaaaatcgaacttgatttttttt-aaataattcgctttgtgtgta |
25568106 |
T |
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| Q |
211 |
tcccttaatcaattgagttcaatc |
234 |
Q |
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| T |
25568107 |
tctcttaatcaattgagttcaatc |
25568130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 234 - 347
Target Start/End: Original strand, 25568257 - 25568371
Alignment:
| Q |
234 |
cgttttgaccttcgtgtatgtgccagaatgtgtataatataaacacgatttaggtctttttaacaattaagcgttttaacctacggaaggtgcccaaagg |
333 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
25568257 |
cgttttgaccttcgtgtatgtgccggaatgtgtataatataaacacgatttaggtctttttaacaattaagcgttttaacctacggtatgtgcccaaagg |
25568356 |
T |
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| Q |
334 |
tgt-taaacaagatt |
347 |
Q |
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| T |
25568357 |
tgtataaacaagatt |
25568371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 346 - 399
Target Start/End: Original strand, 25568393 - 25568446
Alignment:
| Q |
346 |
ttcaaactaatactcaattaactttacaagattcagttgtctaacaaatgaaca |
399 |
Q |
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| T |
25568393 |
ttcaaactaatactcaattaactttacaagattcagttgtctaacaaatgaaca |
25568446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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