View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6802_high_5 (Length: 417)
Name: NF6802_high_5
Description: NF6802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6802_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 10 - 404
Target Start/End: Complemental strand, 36387055 - 36386661
Alignment:
| Q |
10 |
ggacatcacctaccactgctaatcaaagtacactgatttcctcttctgtcaattccctagaacatcagacattagaagctgctgctagagaaacagtgaa |
109 |
Q |
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| T |
36387055 |
ggacgtcacctaccactgctaatcaaagtacactgatttcctcttctgtcaattccctagaacatcagacattagaagctgctgctagagaaacagtgaa |
36386956 |
T |
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| Q |
110 |
ctctggtgcatccacagttgacactgagaattgtgacagcagccttcctcctaatagctatgtaagttgcccgaactagagaactttaatagtgaaaacg |
209 |
Q |
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| T |
36386955 |
ctctggtgcatccactgttgacactgagaattgtgacagcagccttcctcctaatagctatgtaagttgcccgaactagagaactttaatagtgaaaacg |
36386856 |
T |
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| Q |
210 |
ctgttcattgttgcgagttaaactcttagttattttctaacatactatttccttcattcattagattgaaaacagttttcccaccaaaactttggagctt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36386855 |
ctgttcattgttgcgagttaaactcttagttattttctaacatactatttccttcattcattagattgaaaacagttttcccaccaaaactttggagctt |
36386756 |
T |
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| Q |
310 |
atggaatcaccgaatcatggtatgaatataagccagttagttgctttgggtggaaaactatatactccattattcatttgcatgtgttagctgat |
404 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
36386755 |
atggaatcaccgaatcatggtatgaatataagccagttagttgctttgggtggaaaactatatactccattattcctttgcatgtgttagctgat |
36386661 |
T |
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