View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6802_high_9 (Length: 355)
Name: NF6802_high_9
Description: NF6802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6802_high_9 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 355
Target Start/End: Complemental strand, 21372678 - 21372341
Alignment:
| Q |
18 |
atgaatggaatgattccaaatgttgcaccacatgctgcttgtgctccaactgagaagagaatcatggatagtactgcgatcggaagtgtattcgcacgtc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21372678 |
atgaatggaatgattccaaatgttgcaccacatgctgcttgtgctccaactgagaagaggatcatggatagtactgcgatcggaagtgtattcgcacgtc |
21372579 |
T |
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| Q |
118 |
ctaaccatatgcagaaaacccctcctagggtttggaggatccagagtgtccataatcttcctcgcatgccgaataatcttgctgcaacatctgatgcata |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21372578 |
ctaaccatatgcagaaaactcctcctagggtttggaggatccagagtgtccatattcttcctcgcattccgaataatcttgctgcaacatctgatgcata |
21372479 |
T |
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| Q |
218 |
tcctccgaatggacgagcaactatgtttgccattccaaaggatgcagcaatgattccagctgtgtgtaactttaggttaaacctgnnnnnnnatccattc |
317 |
Q |
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| T |
21372478 |
tcctccgaatggacgagcaactatgtttgccattccaaaggatgcagcaatgattccagctgtgtgtaactttaggttaaacctgtttttttatccattc |
21372379 |
T |
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| Q |
318 |
attaaagatttgttagaaaatagaaaaaatgtttatta |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
21372378 |
attaaagatttgttagaaaatagaaaaaatgtttatta |
21372341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 21384879 - 21385216
Alignment:
| Q |
18 |
atgaatggaatgattccaaatgttgcaccacatgctgcttgtgctccaactgagaagagaatcatggatagtactgcgatcggaagtgtattcgcacgtc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21384879 |
atgaatggaatgattccaaatgttgcaccacatgctgcttgtgctccaactgagaagaggatcatggatagtactgcgatcggaagtgtattcgcacgtc |
21384978 |
T |
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| Q |
118 |
ctaaccatatgcagaaaacccctcctagggtttggaggatccagagtgtccataatcttcctcgcatgccgaataatcttgctgcaacatctgatgcata |
217 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
21384979 |
ctaaccatatgcagaaaactcctcctagggtttggaggatccagagtgtccataatcttcctcgcataccgaataatcttgctgcaacatctgatgcata |
21385078 |
T |
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| Q |
218 |
tcctccgaatggacgagcaactatgtttgccattccaaaggatgcagcaatgattccagctgtgtgtaactttaggttaaacctgnnnnnnnatccattc |
317 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
21385079 |
tccaccgaatggacgagcaactatgtttgccattccaaaggatgcagcaatgattccagctgtgtgtaactttaggttaaacctgtttttttatccattc |
21385178 |
T |
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| Q |
318 |
attaaagatttgttagaaaatagaaaaaatgtttatta |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
21385179 |
attaaagatttgttagaaaatagaaaaaatgtttatta |
21385216 |
T |
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