View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6802_low_1 (Length: 571)
Name: NF6802_low_1
Description: NF6802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6802_low_1 |
 | |
|
| [»] chr5 (4 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 571
Target Start/End: Original strand, 8060099 - 8060671
Alignment:
| Q |
1 |
tcagttaaatattaagcctaagccaaaacaaacgggggagaatgggtttgtgttaagttttgatgagaagcatagagataaagtaatggagaagtatatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8060099 |
tcagttaaatattaagcctaagccaaaacaaacgggggagaatgggtttgtgttaagttttgatgagaagcatagagataaagtaatggagaagtatatt |
8060198 |
T |
|
| Q |
101 |
ccacatgttttaggcacttatgaagctatgcaagcagataatagaactctcaagatccattcaatgcaaggtgcttgtctgcaaagtagttttaatcatc |
200 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||| |
|
|
| T |
8060199 |
ccacatgttttaagcccttatgaagctatgcaagcagataatagaactctcaagatccattcattgcaaggtgcttggctacaaagtagttttaatcatc |
8060298 |
T |
|
| Q |
201 |
gagcttcatttgattcaattgctttggatcctgatttaaagaaagctataatcgatgatttagatagattcttgaggaggaaaaagatgtataaaaaagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8060299 |
cagcttcatttgattcaattgctttggatcctgatttaaagaaagctataattgatgatttagatagattcttgaggaggaaaaagatgtataaaaaagt |
8060398 |
T |
|
| Q |
301 |
tggtaagccttggaaacgtgggtacctattgcatggacctccaggaaaaggaaaatctaccctagttgctgctatggcaaa--atatctgaaatttgatg |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8060399 |
tggtaagccttggaaacgtgggtacctattgcatggacctccaggaacaggaaaatctaccctagttgctgctatggcaaaatatatctgaaatttgatg |
8060498 |
T |
|
| Q |
399 |
tgtatgatttggatttaagcggtgtgtatagtaactcagatctcatgagagtcacgaggaacacatctaacaaatccatcattgttattgaagacattga |
498 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8060499 |
tgtatgatttggattcaagcggtgtgtatagtaactcagatctcatgagagtcacgaggaacacatctaacaaatccatcattgttattgaagacattga |
8060598 |
T |
|
| Q |
499 |
ctgcaacaaggaggtgcttaaccgatcaagatcagaaatgttttcagtttgttttcttactctctcaccatct |
571 |
Q |
| |
|
||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8060599 |
ctgtaacaaggaggtgcttaaccaatcaagatcagaaatgttttcagtttgttttcttactccctcaccatct |
8060671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 324 - 571
Target Start/End: Complemental strand, 7932178 - 7931929
Alignment:
| Q |
324 |
acctattgcatggacctccaggaaaaggaaaatctaccctagttgctgctatggcaaaatat--ctgaaatttgatgtgtatgatttggatttaagcggt |
421 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7932178 |
acctattgcatggacctccaggaacaggaaaatctaccctagttgctgctatggcaaaatatatctgaaatttgatgtgtatgatttggatttaagcggt |
7932079 |
T |
|
| Q |
422 |
gtgtatagtaactcagatctcatgagagtcacgaggaacacatctaacaaatccatcattgttattgaagacattgactgcaacaaggaggtgcttaacc |
521 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7932078 |
gtgtatagtaactcatatctcatgagagtcatgaggaacacatctaacaaatccatcattgttattgaagacattgactgcaacaaggaggtgcttaact |
7931979 |
T |
|
| Q |
522 |
gatcaagatcagaaatgttttcagtttgttttcttactctctcaccatct |
571 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7931978 |
gatcaagatcagaaatgttttcagtttgttttcttactccctcaccatct |
7931929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 41 - 504
Target Start/End: Original strand, 8051946 - 8052412
Alignment:
| Q |
41 |
aatgggtttgtgttaagttttgatgagaagcatagagataaagtaatggagaagtatattccacatgttttaggcacttatgaagctatgcaagcagata |
140 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||| | |
|
|
| T |
8051946 |
aatgggtttgtgttaagttttgatgagaagcatagagataaagtaatggaaaagtatattccacatgttttaagcacttatgaagctataaaagcaggaa |
8052045 |
T |
|
| Q |
141 |
atagaactctcaagatccattcaatgcaaggtg---cttgtctgcaaagtagttttaatcatcgagcttcatttgattcaattgctttggatcctgattt |
237 |
Q |
| |
|
||| |||||| ||||| |||||||||||| || | || |||||| ||| | |||| ||||||||||||||| ||||| ||||||||||| | |
|
|
| T |
8052046 |
ataaaactcttaagattcattcaatgcaatctggaccatggaaacaaagtgatttaacacatcctgcttcatttgattcacttgctatggatcctgatct |
8052145 |
T |
|
| Q |
238 |
aaagaaagctataatcgatgatttagatagattcttgaggaggaaaaagatgtataaaaaagttggtaagccttggaaacgtgggtacctattgcatgga |
337 |
Q |
| |
|
||| || ||||||| |||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| |||| |
|
|
| T |
8052146 |
aaaaaattctataattgatgatttagatcgatttttgaggaggaaaaagttgtataaaaaagttggtaagccttggaaacgtggttacttattgtatggt |
8052245 |
T |
|
| Q |
338 |
cctccaggaaaaggaaaatctaccctagttgctgctatggcaaaatatctgaaatttgatgtgtatgatttggatttaagcggtgtgtatagtaactcag |
437 |
Q |
| |
|
|| ||||||| ||||||||||| || |||||||||||||||| ||| |||||||||||||||||||||||||| | ||| |||| | ||||||| |
|
|
| T |
8052246 |
ccaccaggaacaggaaaatctagtcttattgctgctatggcaaagtatttgaaatttgatgtgtatgatttggatcttagctcagtgttttcaaactcag |
8052345 |
T |
|
| Q |
438 |
atctcatgagagtcacgaggaacacatctaacaaatccatcattgttattgaagacattgactgcaa |
504 |
Q |
| |
|
| |||||||||| || ||| | || ||||||| ||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
8052346 |
aactcatgagagccatgagagagacttctaacagatctatcattgtttttgaagacattgattgcaa |
8052412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 282
Target Start/End: Complemental strand, 32360366 - 32360293
Alignment:
| Q |
209 |
tttgattcaattgctttggatcctgatttaaagaaagctataatcgatgatttagatagattcttgaggaggaa |
282 |
Q |
| |
|
||||| ||| |||||||||| | | || ||||||||| |||||| |||||||||||| ||| ||||||||||| |
|
|
| T |
32360366 |
tttgactcacttgctttggaacgtcatctaaagaaagttataattgatgatttagatcaatttttgaggaggaa |
32360293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 571
Target Start/End: Complemental strand, 47547635 - 47547065
Alignment:
| Q |
1 |
tcagttaaatattaagcctaagccaaaacaaacgggggagaatgggtttgtgttaagttttgatgagaagcatagagataaagtaatggagaagtatatt |
100 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
47547635 |
tcagttatatattaagcctaagccaaaataaacgggggagaatgggtttgtgttaagttttgatgagaagcatagatataaagtgatggagaagtatatt |
47547536 |
T |
|
| Q |
101 |
ccacatgttttaggcacttatgaagctatgcaagcagataatagaactctcaagatccattcaatgcaaggtgcttgtctgcaaagtagttttaatcatc |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||| |
|
|
| T |
47547535 |
ccacatgttttaagcacttatgaagctatgcaagcagataatagaactctcaagatccattcattgcaaggtgcttggcttcaaagtagttttaatcatc |
47547436 |
T |
|
| Q |
201 |
gagcttcatttgattcaattgctttggatcctgatttaaagaaagctataatcgatgatttagatagattcttgaggaggaaaaagatgtataaaaaagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47547435 |
cagcttcatttgattcaattgctttggatcctgatttaaagaaagctataattgatgatttagatagattcttgaggaggaaaaagatgtataaaaaagt |
47547336 |
T |
|
| Q |
301 |
tggtaagccttggaaacgtgggtacctattgcatggacctccaggaaaaggaaaatctaccctagttgctgctatggcaaaatatctgaaatttgatgtg |
400 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47547335 |
tggcaagccttggaaacgtgggtacctattgcatggacctccaggaacaggaaaatctaccctagttgctgctatggcaaaatatctgaaatttgatgtg |
47547236 |
T |
|
| Q |
401 |
tatgatttggatttaagcggtgtgtatagtaactcagatctcatgagagtcacgaggaacacatctaacaaatccatcattgttattgaagacattgact |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
47547235 |
tatgatttggatttaagcggtgtgtatagtaactcagatctcatgagagtcatgaggaacacatctaacacatccatcattgttattgaagacattgact |
47547136 |
T |
|
| Q |
501 |
gcaacaaggaggtgcttaaccgatcaagatcagaaatgttttcagtttgttttcttactctctcaccatct |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
47547135 |
gcaacaaggaggtgcttaaccgatcaagatcagaaatgttttcagtttgttttcttactccctcaccatct |
47547065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University