View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6802_low_11 (Length: 362)
Name: NF6802_low_11
Description: NF6802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6802_low_11 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 20 - 349
Target Start/End: Complemental strand, 37050812 - 37050483
Alignment:
| Q |
20 |
ttatgtaggtattgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatctt |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37050812 |
ttatgtaggtattgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatctt |
37050713 |
T |
|
| Q |
120 |
gcaggtcgtgatctcactgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgtaagggatatgaagg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37050712 |
gcaggtcgtgatctcactgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgtaagggatatgaagg |
37050613 |
T |
|
| Q |
220 |
agaaattggcttatattgctcttgattacgagcaggagttggaaactgctaagactagctcagctgttgagaagacctatgagctacctgatgggcaggt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37050612 |
agaaattggcttatattgctcttgattacgagcaggagttggaaactgctaaaactagctcagctgttgagaagacctatgagctacctgatgggcaggt |
37050513 |
T |
|
| Q |
320 |
gatcacgatcggtgctgaaagattctgatg |
349 |
Q |
| |
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||||||||||||||||||||||||| |||| |
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| T |
37050512 |
gatcacgatcggtgctgaaagattccgatg |
37050483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 21 - 205
Target Start/End: Original strand, 8689563 - 8689747
Alignment:
| Q |
21 |
tatgtaggtattgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatcttg |
120 |
Q |
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|||| ||||||||| |||||||||| |||||||| |||||||| || || || |||||||| ||||| ||||||||||| ||||||||| | ||||| | |
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| T |
8689563 |
tatgcaggtattgtgttggattctggtgatggtgtcagccacactgtccccatctacgagggttatgcccttccacatgccatccttcgtcttgatctgg |
8689662 |
T |
|
| Q |
121 |
caggtcgtgatctcactgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgt |
205 |
Q |
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| |||||||| || || ||| |||||||||||||| || || ||||| || |||| ||||| |||||||||||||||||||| |
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| T |
8689663 |
ctggtcgtgaccttaccgatttcttgatgaagattttgactgaacgtggttattcttttaccacctcagcagagcgagaaattgt |
8689747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 25 - 334
Target Start/End: Original strand, 68182 - 68491
Alignment:
| Q |
25 |
taggtattgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatcttgcagg |
124 |
Q |
| |
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||||||||||||| |||||||| |||||||| |||||||| |||||||| || || |||||||| |||||||| |||||||| ||||||||||||||||| |
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| T |
68182 |
taggtattgttcttgattctggagatggtgtcagccacacagttcctatctatgaaggatatgcccttccacacgcaatcctgcgtttggatcttgcagg |
68281 |
T |
|
| Q |
125 |
tcgtgatctcactgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgtaagggatatgaaggagaaa |
224 |
Q |
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|||||||||||| || || | ||||| || |||||||||||||| ||| |||||||||| |||| ||||| ||||| || || || ||||||| ||| |
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| T |
68282 |
tcgtgatctcacagacgccctcatgaaaatcttaaccgagcgtggatactctttcaccacaacagccgagcgtgaaatcgtgagagacgtgaaggaaaaa |
68381 |
T |
|
| Q |
225 |
ttggcttatattgctcttgattacgagcaggagttggaaactgctaagactagctcagctgttgagaagacctatgagctacctgatgggcaggtgatca |
324 |
Q |
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| | || |||||||||||||| || || ||||| ||||| | ||||| ||||||||||||||||||| ||||||| |||||||||| |||||||||| |
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| T |
68382 |
ctatcctacattgctcttgattatgaacaagagttagaaacctcgaagacgagctcagctgttgagaagagctatgagttacctgatggacaggtgatca |
68481 |
T |
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| Q |
325 |
cgatcggtgc |
334 |
Q |
| |
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| || ||||| |
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| T |
68482 |
caataggtgc |
68491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 26 - 337
Target Start/End: Original strand, 41388147 - 41388458
Alignment:
| Q |
26 |
aggtattgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatcttgcaggt |
125 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |||||||| || || || ||||| |||||||| ||||||||||| ||||||||| | ||| | ||||| |
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| T |
41388147 |
aggtattgttctggactctggagatggtgtcagccacactgtaccaatctacgaaggatatgcccttccacatgctatccttcgtcttgatttagcaggg |
41388246 |
T |
|
| Q |
126 |
cgtgatctcactgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgtaagggatatgaaggagaaat |
225 |
Q |
| |
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||||| ||||||||||| |||||||| || | ||||||||||| || ||||||| || |||| ||||| ||||||||||| ||| ||||||| || |
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| T |
41388247 |
cgtgacctcactgatgccttgatgaaaatccttaccgagcgtggttattctttcactaccacagccgagcgtgaaattgtaagagatgtgaaggaaaagc |
41388346 |
T |
|
| Q |
226 |
tggcttatattgctcttgattacgagcaggagttggaaactgctaagactagctcagctgttgagaagacctatgagctacctgatgggcaggtgatcac |
325 |
Q |
| |
|
|| |||||||||| ||||||| ||||| ||| | |||||| | || || || || ||||||||||||| ||||||||| |||||||| ||| | ||||| |
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| T |
41388347 |
tgtcttatattgcccttgattttgagcaagagcttgaaacttcaaaaacaagttctgctgttgagaagagctatgagcttcctgatggacagataatcac |
41388446 |
T |
|
| Q |
326 |
gatcggtgctga |
337 |
Q |
| |
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|| |||||||| |
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| T |
41388447 |
tattggtgctga |
41388458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 1262477 - 1262366
Alignment:
| Q |
20 |
ttatgtaggtattgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatctt |
119 |
Q |
| |
|
||||||||||||||| || |||||||| |||||||| || ||||| || || || ||||| || ||||| ||||| |||||||| ||||| ||||||||| |
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| T |
1262477 |
ttatgtaggtattgtgcttgattctggtgatggtgtgagtcacacagtgcccatatacgaagggtatgctcttccccatgcaattcttcggttggatctt |
1262378 |
T |
|
| Q |
120 |
gcaggtcgtgat |
131 |
Q |
| |
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|| || |||||| |
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|
| T |
1262377 |
gctgggcgtgat |
1262366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 325
Target Start/End: Complemental strand, 59625 - 59326
Alignment:
| Q |
26 |
aggtattgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatcttgcaggt |
125 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||| || ||||| |||||||| ||||| || ||||| || ||||||||| | ||| | || ||| |
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| T |
59625 |
aggtattgtgttggattctggtgatggtgtcagccacacagtccctatctacgagggttatgccctcccacacgccatccttcgtcttgatttggctggt |
59526 |
T |
|
| Q |
126 |
cgtgatctcactgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgtaagggatatgaaggagaaat |
225 |
Q |
| |
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||||| || |||||| ||||||| ||| | || || ||||| || |||| ||||| ||||||||||| |||||||| |||||||||||||| || |
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|
| T |
59525 |
cgtgacctgactgattacatgatgaaaattctgacagaacgtggttattcttttaccacctcagcagagcgtgaaattgtgagggatatgaaggaaaagc |
59426 |
T |
|
| Q |
226 |
tggcttatattgctcttgattacgagcaggagttggaaactgctaagactagctcagctgttgagaagacctatgagctacctgatgggcaggtgatcac |
325 |
Q |
| |
|
||||||| ||||| ||||| || ||||| ||| | || || | ||||| ||||| || || ||||||| ||||||| | ||||||||||| || ||||| |
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|
| T |
59425 |
tggcttacattgcccttgactatgagcaagagctagagacatccaagaccagctctgcagtggagaagagctatgagttgcctgatgggcaagtcatcac |
59326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 43647493 - 43647313
Alignment:
| Q |
25 |
taggtattgttctggattctggggatggtgttagccacacggttcctatttacgagggatatgcacttccacatgcaatccttcgtttggatcttgcagg |
124 |
Q |
| |
|
|||||||||| |||||||||| || ||||| || ||||| || || || || ||||| |||||||| |||||||| |||||||||||||||||||| || |
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| T |
43647493 |
taggtattgtgttggattctggtgacggtgtgagtcacactgtgccaatctatgagggttatgcactcccacatgccatccttcgtttggatcttgctgg |
43647394 |
T |
|
| Q |
125 |
tcgtgatctcactgatgcattgatgaagattttaaccgagcgtggctacactttcaccacttcagcagagcgagaaattgt |
205 |
Q |
| |
|
||||||||| |||||| | ||||||||||| | || ||| | || |||| |||||||| ||||| ||||| |||||||| |
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| T |
43647393 |
tcgtgatctaactgattctttgatgaagatcctcactgagagagggtacatgttcaccacctcagccgagcgggaaattgt |
43647313 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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