View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6802_low_17 (Length: 335)
Name: NF6802_low_17
Description: NF6802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6802_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 43235115 - 43235447
Alignment:
| Q |
1 |
tttttgttaataaatttagttcataaaattataaataaaagaaaatcttataaatacatttttcattttaatatatctaaggactaa----gttgtttgc |
96 |
Q |
| |
|
|||| |||||| |||||||| ||||||||||||||||||||||| |||||||||| |||| |||||||||||||||| ||||||| ||||||||| |
|
|
| T |
43235115 |
ttttcgttaatcaatttagtccataaaattataaataaaagaaacacttataaatatatttgccattttaatatatcta-ggactaaattggttgtttgc |
43235213 |
T |
|
| Q |
97 |
ccaaaaattgtgtattcgattttttgaaattnnnnnnnttgtttcttctcataaaactttgattttttggttccttataatgtttaatctgagagggtac |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43235214 |
ccaaaaattgtgtattcgattttttgaaatttaaaaagttgtttcttctcataaaactttgattttttggttccttataatgtttaatctgagagggtac |
43235313 |
T |
|
| Q |
197 |
ataaccaatttacttatacactatgtcatggtgcacaattatttctaggatattgaaagttgtttgtaaatgcgtttgatatgtttacgtcatcaatcat |
296 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43235314 |
ataaccaaattacttatacactatgtcatggtgcacaattatttctaggatattgaaagttgtttgtaaatgcgtttgatatgtttacgtcatcaatcat |
43235413 |
T |
|
| Q |
297 |
catggtgataatctcctccttctgatgtccatct |
330 |
Q |
| |
|
|||||||||||||||| |||||| |||| ||||| |
|
|
| T |
43235414 |
catggtgataatctccaccttcttatgtacatct |
43235447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University