View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6802_low_18 (Length: 330)
Name: NF6802_low_18
Description: NF6802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6802_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 27447604 - 27447304
Alignment:
| Q |
19 |
catcatacttgtagaatcttgcaaaaccctgagatcatagtagattatcctactgatcactcttccatgtttcttagttttgacaactctttcccaacac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27447604 |
catcatacttgtagaatcttgcaaaaccctgagatcatagtagattatcctactgatcactcttccatgtttcttagttttgacaactctttcccaacac |
27447505 |
T |
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| Q |
119 |
cagccaaacaagactgtccttttctctcagtgaaaaaggaggagtgcaaggaagaggttgttcatcctcctccttcttcaaatgattacctctctggact |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27447504 |
cagccaaacaagactgtccttttctctcagtgaaaaaggaggagtgcaaggaagaggttgttcatcctcctccttcttcaaatgattacctctctggact |
27447405 |
T |
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| Q |
219 |
cacttttgatgatccagaaaaggatgtcacactatcatcaacacttgattctcatgatcacttaggtgtccatatttctgatatcatgtatgatgatgtc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27447404 |
cacttttgatgatccagaaaaggatgtcacactatcatcaacacttgattctcatgatcacttaggtgtccatatttctgatatcatgtatgatgatgtc |
27447305 |
T |
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| Q |
319 |
c |
319 |
Q |
| |
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| |
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| T |
27447304 |
c |
27447304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 145 - 319
Target Start/End: Complemental strand, 27430201 - 27430027
Alignment:
| Q |
145 |
tcagtgaaaaaggaggagtgcaaggaagaggttgttcatcctcctccttcttcaaatgattacctctctggactcacttttgatgatccagaaaaggatg |
244 |
Q |
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|||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
27430201 |
tcagtgaaaagggaggattgcaaggaagagattgttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatg |
27430102 |
T |
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| Q |
245 |
tcacactatcatcaacacttgattctcatgatcacttaggtgtccatatttctgatatcatgtatgatgatgtcc |
319 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||||||| |
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| T |
27430101 |
tcacactatcatcaacacttgattctcatgatcatttaggtgtcaacattcctgatatcatgtatgatgatgtcc |
27430027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 19 - 147
Target Start/End: Complemental strand, 27430357 - 27430229
Alignment:
| Q |
19 |
catcatacttgtagaatcttgcaaaaccctgagatcatagtagattatcctactgatcactcttccatgtttcttagttttgacaactctttcccaacac |
118 |
Q |
| |
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||||||||||||||||||||||||| | ||||||||||| | |||| |||| ||| || ||||||||||| ||||| |||||||||||||||||||||| |
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| T |
27430357 |
catcatacttgtagaatcttgcaaagctctgagatcataatggattctccttgtgaccagtcttccatgttccttagctttgacaactctttcccaacac |
27430258 |
T |
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| Q |
119 |
cagccaaacaagactgtccttttctctca |
147 |
Q |
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||||||||||||| || |||||||||||| |
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| T |
27430257 |
cagccaaacaagattgcccttttctctca |
27430229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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