View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6802_low_19 (Length: 314)
Name: NF6802_low_19
Description: NF6802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6802_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 3654649 - 3654360
Alignment:
| Q |
5 |
ttgaaagtgtgctcctccttgaggtgttaaattcgattatctctaatgccaaagatgggctaatttagcttctttnnnnnnnnn--ttgtcaattgaaat |
102 |
Q |
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| T |
3654649 |
ttgaaagtgtgctcctcctcgagatgttaaattcgattatctctaatgccaaaggtgggttaatttagtttcttaaaaaaaaaaaattgtcaattgaaat |
3654550 |
T |
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| Q |
103 |
gtggcaaagaaaacacatgaagggtgtataagtaaatttcctaatgaaaaggagtggagtaaaatgatggggttacttactggcatgtgaaacaaagaag |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3654549 |
gtggcaaagaaaacacatgaagggtgtataagtaaatttcctaatgaaaaggagtggagtaaaatgatggggttacttactggcatgtgaaacaaagaag |
3654450 |
T |
|
| Q |
203 |
aaagagggtatgtgtttaaccttataaggaaaacaattatgtcttctgtagctattcacatgctcaatactttgatagattcattaggga |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3654449 |
aaagagggtatgtgtttaaccttataaggaaaacaattatgtcttctgtagctattcacatgctcaatactttgatagattcattaggga |
3654360 |
T |
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