View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6802_low_4 (Length: 496)
Name: NF6802_low_4
Description: NF6802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6802_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 51 - 247
Target Start/End: Complemental strand, 3285903 - 3285707
Alignment:
| Q |
51 |
tttgatagttctgttaatgctgtctcctttggttttgttgctactgctgttcttatttcaatgttcttactcatggccatttttgaaaggtttcttgcac |
150 |
Q |
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| T |
3285903 |
tttgatagttctgttaatgctgtctcctttggttttgttgctactgctgttcttatttcaatgttcttactcatggccatttttgaaaggtttcttgcac |
3285804 |
T |
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| Q |
151 |
cttcttcacaagctttgtttcctaatcttcgccggaaccgtcgtgccgttgagtctccgatcagaaaacttggtcaccaccaatcacctaaagtgag |
247 |
Q |
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| T |
3285803 |
cttcttcacaagctttgtttcctaatcttcgccggaaccgtcgtgccgttgagtctccgatcagaaaacttggtcaccaccaatcacctaaagtgag |
3285707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 303 - 402
Target Start/End: Complemental strand, 3285651 - 3285552
Alignment:
| Q |
303 |
gtaatgtgactttcctaaacaatgatgattatttatttatctgacaaaaatgttttgttgtttgtttctattggttgcttttacttctcatctaattaat |
402 |
Q |
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| T |
3285651 |
gtaatgtgactttcctaaacaatgatgattatttatttatctgacaaaaatgttttgttgtttgtttctataggttgcttttacttctcatcttattaat |
3285552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 436 - 496
Target Start/End: Complemental strand, 3285518 - 3285458
Alignment:
| Q |
436 |
ctgatgaattcctctgtcatgtctaattaagaaagtttcactgttctcattcatcacagtt |
496 |
Q |
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| T |
3285518 |
ctgatgaattcctctgtcatgtctaattaagaaagtttcactgttctcattcatcacagtt |
3285458 |
T |
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