View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6802_low_5 (Length: 495)
Name: NF6802_low_5
Description: NF6802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6802_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 3 - 298
Target Start/End: Original strand, 33385812 - 33386107
Alignment:
| Q |
3 |
aaaagcagagattcaaaaaacaccaaaataattgatggaagaaacatgcctaaaggtgtacaagaagatcgtaatcaaacatgaagctggcaagagtcca |
102 |
Q |
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| T |
33385812 |
aaaagcaatgattcaaaaaacaccaaaataattgatggaagaaacatgcctaaaggtgtacaagaagatcataatcaaacatgaagctggcaagagtcca |
33385911 |
T |
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| Q |
103 |
attacatggtctatacattataggaggatccagcaaacctccaagaacttttgtcttcttttgatgcatattagtggcaagagttcataaataatgggat |
202 |
Q |
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| T |
33385912 |
attacatggtctatacattataggaggatccagcaaacctccaagaagttttgtcttcttttgatgcatattagtggcaagagttcataaataatgggat |
33386011 |
T |
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| Q |
203 |
ggattctgtagagtgtaacaagacctgaaatttagtacacttgccttcttattgcaattctataggttataaacaaattttgaaaagaaactaaaa |
298 |
Q |
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| T |
33386012 |
ggattctgtagagtgtaacaagacctgaaatttagtacacttgccttcttattgcaattctataggttataaacaaattttgaaaagaaactaaaa |
33386107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 270 - 495
Target Start/End: Original strand, 33386952 - 33387177
Alignment:
| Q |
270 |
tataaacaaattttgaaaagaaactaaaacgtgacattggaaaacttttaaccgggccaatgtacgtgatgcaaaaattggttttattccatatattcag |
369 |
Q |
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| T |
33386952 |
tataaacaaattttgaaaagaaactaaaacgtgacattggaaaacttttaaccgggccaatgtacgtgatgcaaaaattggttttattccatatattcag |
33387051 |
T |
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| Q |
370 |
attggtcagatcattcagtatgtgacataggtaagctaccacttcctacataataatgattgtgttggtcttattactcctctttgtagcctccgccaac |
469 |
Q |
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| T |
33387052 |
attggtcagatcattcagtatgtgacataggtaagctaccacttcctacatattaatgattgtgttggtcttattactcctctttgtagcctccgccaac |
33387151 |
T |
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| Q |
470 |
cgtcgtggtggtcctttgtcgcctta |
495 |
Q |
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| T |
33387152 |
cttcgtggtggtcctttgtcgcctta |
33387177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 25428289 - 25428240
Alignment:
| Q |
5 |
aagcagagattcaaaaaacaccaaaataattgatggaagaaacatgccta |
54 |
Q |
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| T |
25428289 |
aagcaaagattcagaaaacaccaaaataattgatgggaggaacatgccta |
25428240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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