View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6802_low_8 (Length: 398)
Name: NF6802_low_8
Description: NF6802
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6802_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-162; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 80 - 381
Target Start/End: Complemental strand, 21372118 - 21371817
Alignment:
| Q |
80 |
tttttaatatactttgagcttgaaagaattgaactcaattgattaattgtgttgtggttccaatgacacaaactaacctttgtgaacttgtctttagcaa |
179 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21372118 |
tttttaatatactttgagcttgaaagaattgaactcaattgattaattgtgctgtggttccaatgatacaaactaacctttgtgaacttgtctttagcaa |
21372019 |
T |
|
| Q |
180 |
cattacccttcttctgtaaggcagcaaggttaccatcaggtaaatcttggcctaatgttaagaccataatacccatgataacatgcaaccaaccagggat |
279 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21372018 |
cattacccttcttctgtaaggcaccaaggttaccatcaggtaaatcttggcctaatgttaagaccataatacccatgataacatgcaaccaaccagggat |
21371919 |
T |
|
| Q |
280 |
aaaaaaggcaattctccaagcagtgaaaggagtagcaccagctcttctaatcaattcatacaccaaaggcataataagctgagtggccccaccacccata |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21371918 |
aaaaaaggcaattctccaagcagtgaaaggagtagcaccagctcttctaatcaattcatacaccaaaggcataataagctgagtggccccaccacccata |
21371819 |
T |
|
| Q |
380 |
tt |
381 |
Q |
| |
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|| |
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| T |
21371818 |
tt |
21371817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 80 - 381
Target Start/End: Original strand, 21385439 - 21385740
Alignment:
| Q |
80 |
tttttaatatactttgagcttgaaagaattgaactcaattgattaattgtgttgtggttccaatgacacaaactaacctttgtgaacttgtctttagcaa |
179 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21385439 |
tttttaatatactttgagcttgaaagaattgaactcaattgattaattgtgctgtggttccaatgatacaaactaacctttgtgaacttgtctttagcaa |
21385538 |
T |
|
| Q |
180 |
cattacccttcttctgtaaggcagcaaggttaccatcaggtaaatcttggcctaatgttaagaccataatacccatgataacatgcaaccaaccagggat |
279 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21385539 |
cattacccttcttctgtaaggcaccaaggttaccatcaggtaaatcttggcctaatgttaagaccataatacccatgataacatgcaaccaaccagggat |
21385638 |
T |
|
| Q |
280 |
aaaaaaggcaattctccaagcagtgaaaggagtagcaccagctcttctaatcaattcatacaccaaaggcataataagctgagtggccccaccacccata |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21385639 |
aaaaaaggcaattctccaagcagtgaaaggagtagcaccagctcttctaatcaattcatacaccaaaggcataataagctgagtggccccaccacccata |
21385738 |
T |
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| Q |
380 |
tt |
381 |
Q |
| |
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|| |
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| T |
21385739 |
tt |
21385740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 21372198 - 21372157
Alignment:
| Q |
1 |
caatgcaaaaatccatgtcctgtaatttgttatagcatacca |
42 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
21372198 |
caatgcaaaaatccatgtcctgtaatttgttatagcatacca |
21372157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 21385359 - 21385400
Alignment:
| Q |
1 |
caatgcaaaaatccatgtcctgtaatttgttatagcatacca |
42 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
21385359 |
caatgcaaaaatccatgtcctgtaatttgttatagcatacca |
21385400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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