View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6803_high_10 (Length: 203)

Name: NF6803_high_10
Description: NF6803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6803_high_10
NF6803_high_10
[»] chr4 (3 HSPs)
chr4 (22-188)||(45733108-45733280)
chr4 (126-188)||(45738578-45738640)
chr4 (40-75)||(23861434-23861470)
[»] chr1 (3 HSPs)
chr1 (24-86)||(44482239-44482300)
chr1 (29-85)||(6427360-6427415)
chr1 (24-85)||(25361896-25361956)
[»] chr5 (3 HSPs)
chr5 (24-85)||(3966513-3966573)
chr5 (25-85)||(22423802-22423861)
chr5 (39-75)||(38866474-38866510)
[»] chr3 (2 HSPs)
chr3 (25-86)||(27764715-27764776)
chr3 (21-85)||(8039216-8039279)
[»] chr6 (6 HSPs)
chr6 (34-85)||(9617444-9617494)
chr6 (31-85)||(9025490-9025543)
chr6 (35-85)||(9629393-9629442)
chr6 (39-85)||(30866148-30866193)
chr6 (22-79)||(26562705-26562761)
chr6 (35-79)||(7377995-7378038)
[»] chr8 (1 HSPs)
chr8 (40-85)||(31236582-31236626)
[»] chr7 (1 HSPs)
chr7 (31-79)||(22602706-22602753)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 45733280 - 45733108
Alignment:
Q  22 ttcgacactgacacgactccgacacatataaattacattgaatcatgtgattttctcatattatatattattattggtgtcggcgta------ttcctgt 115  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||    
T  45733280 ttcgactctgacacgactccgacacatataaattacattgaatcatgtgattttctcatattatatattattattggtgtcggcgtatctctgttcctgt 45733181  T
Q  116 cgtgtccggtcatgtttcatagctttcttctgttttgaatgtgattcttataataatcattgatcacaggttc 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45733180 cgtgtccggtcatgtttcatagctttcttctgttttgaatgtgattcttataataatcattgatcataggttc 45733108  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 126 - 188
Target Start/End: Complemental strand, 45738640 - 45738578
Alignment:
Q  126 catgtttcatagctttcttctgttttgaatgtgattcttataataatcattgatcacaggttc 188  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  45738640 catgtttcatagctttcttctgttttgaatgtgattcttataataatcattgttcataggttc 45738578  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 75
Target Start/End: Original strand, 23861434 - 23861470
Alignment:
Q  40 ccgacacatata-aattacattgaatcatgtgatttt 75  Q
    |||||||||||| ||||||||||||||||||||||||    
T  23861434 ccgacacatatataattacattgaatcatgtgatttt 23861470  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 44482300 - 44482239
Alignment:
Q  24 cgacactgacacgactccgacacatataaattacattgaatcatgtgattttctcatattata 86  Q
    |||||| |||||||| ||||||||||||| ||||| ||||| |||||||||||||| ||||||    
T  44482300 cgacaccgacacgacaccgacacatataa-ttacactgaattatgtgattttctcaaattata 44482239  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 6427415 - 6427360
Alignment:
Q  29 ctgacacgactccgacacatataaattacattgaatcatgtgattttctcatattat 85  Q
    |||||||||| || |||||||||| ||||||||||| |||||||||||||| |||||    
T  6427415 ctgacacgacaccaacacatataa-ttacattgaattatgtgattttctcaaattat 6427360  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 25361956 - 25361896
Alignment:
Q  24 cgacactgacacgactccgacacatataaattacattgaatcatgtgattttctcatattat 85  Q
    |||||| |||||||| | ||||||||||| ||||| ||||| |||||||||||||| |||||    
T  25361956 cgacaccgacacgacactgacacatataa-ttacactgaattatgtgattttctcaaattat 25361896  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 3966573 - 3966513
Alignment:
Q  24 cgacactgacacgactccgacacatataaattacattgaatcatgtgattttctcatattat 85  Q
    ||||||||||||||| ||||||||||| ||||||| |||||  ||||||||||||| |||||    
T  3966573 cgacactgacacgacaccgacacatat-aattacactgaattgtgtgattttctcaaattat 3966513  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 22423802 - 22423861
Alignment:
Q  25 gacactgacacgactccgacacatataaattacattgaatcatgtgattttctcatattat 85  Q
    ||||| |||||||| |||||| |||||| ||| ||||||| |||||||||||||| |||||    
T  22423802 gacaccgacacgacaccgacatatataa-ttatattgaattatgtgattttctcaaattat 22423861  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 38866510 - 38866474
Alignment:
Q  39 tccgacacatataaattacattgaatcatgtgatttt 75  Q
    |||||||||||||||||||||||||| |||| |||||    
T  38866510 tccgacacatataaattacattgaattatgtcatttt 38866474  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 27764776 - 27764715
Alignment:
Q  25 gacactgacacgactccgacacatataaattacattgaatcatgtgattttctcatattata 86  Q
    |||||||||| ||| ||||| ||||||||||||||||||| || | ||||||||| ||||||    
T  27764776 gacactgacatgacaccgacccatataaattacattgaattatataattttctcaaattata 27764715  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 8039279 - 8039216
Alignment:
Q  21 attcgacactgacacgactccgacacatataaattacattgaatcatgtgattttctcatattat 85  Q
    ||||||||||||||| || ||||||| ||| | |||||||||||||||  ||||||||| |||||    
T  8039279 attcgacactgacacaacaccgacacctatga-ttacattgaatcatgccattttctcaaattat 8039216  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 9617494 - 9617444
Alignment:
Q  34 acgactccgacacatataaattacattgaatcatgtgattttctcatattat 85  Q
    ||||| ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  9617494 acgacaccgacacatataa-ttacattgaattatgtgattttctcaaattat 9617444  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 9025490 - 9025543
Alignment:
Q  31 gacacgactccgacacatataaattacattgaatcatgtgattttctcatattat 85  Q
    |||||||| ||||||||||||| ||||| ||||| |||||||||||||| |||||    
T  9025490 gacacgacaccgacacatataa-ttacactgaattatgtgattttctcaaattat 9025543  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 9629442 - 9629393
Alignment:
Q  35 cgactccgacacatataaattacattgaatcatgtgattttctcatattat 85  Q
    |||| ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  9629442 cgacaccgacacatataa-ttacattgaattatgtgattttctcaaattat 9629393  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 30866148 - 30866193
Alignment:
Q  39 tccgacacatataaattacattgaatcatgtgattttctcatattat 85  Q
    |||||||||||||| ||||||||||| |||||||||||||| |||||    
T  30866148 tccgacacatataa-ttacattgaattatgtgattttctcaaattat 30866193  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 26562761 - 26562705
Alignment:
Q  22 ttcgacactgacacgactccgacacatataaattacattgaatcatgtgattttctca 79  Q
    |||||||| ||||||||  |||||||||||| ||||| ||||| ||||||||||||||    
T  26562761 ttcgacaccgacacgacatcgacacatataa-ttacactgaattatgtgattttctca 26562705  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 79
Target Start/End: Complemental strand, 7378038 - 7377995
Alignment:
Q  35 cgactccgacacatataaattacattgaatcatgtgattttctca 79  Q
    |||| ||||||||||||| ||||||||||| ||||||||||||||    
T  7378038 cgacaccgacacatataa-ttacattgaattatgtgattttctca 7377995  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 31236582 - 31236626
Alignment:
Q  40 ccgacacatataaattacattgaatcatgtgattttctcatattat 85  Q
    ||||||||||||| ||||||||||| |||||||||||||| |||||    
T  31236582 ccgacacatataa-ttacattgaattatgtgattttctcaaattat 31236626  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 79
Target Start/End: Original strand, 22602706 - 22602753
Alignment:
Q  31 gacacgactccgacacatataaattacattgaatcatgtgattttctca 79  Q
    |||||||| ||||||||||||| ||||| ||||| ||||||||||||||    
T  22602706 gacacgacaccgacacatataa-ttacactgaattatgtgattttctca 22602753  T

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