View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6803_high_2 (Length: 628)
Name: NF6803_high_2
Description: NF6803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6803_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 4 - 612
Target Start/End: Original strand, 5288264 - 5288873
Alignment:
| Q |
4 |
gcaatagctttgaaagtcctagtggaagacgatcgtgaagatgatatgttattcaaaactttcagtttattcatcaacggttttatttctatgacataaa |
103 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5288264 |
gcaatagctttggaagtcctagtggaagacgatcgtaaagatgacatgttattcaaaactttcagtttattcatcaacggttttatttctatgacataaa |
5288363 |
T |
|
| Q |
104 |
aagtaagtatataatcaacttaactataacaaaaatcgaaatcaacaacattacaagtagtaaaacagagatcagtaactaaccttgaaagaaggtactg |
203 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5288364 |
aagtaagtatataatcaacttaactaaaacaaaaatcgaaatcaacaacattacaagtagtaaaacagagatcagtaactaaccttgaaagaaggtactg |
5288463 |
T |
|
| Q |
204 |
ggagcaacaaaatcaaacctaaaaatatagcataacacagttaattaatggtaaattggtaatggtggttgcgatcgacgagtgttgagtacatgagagt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5288464 |
ggagcaacaaaatcaaacctaaaaatatagcataacacagttaattaatcgtaaattggtaatggtggttgcgatcgacgagtgttgagtacatgagagt |
5288563 |
T |
|
| Q |
304 |
atcgagaacgatgataacgagacggttaattgaaggtttggtccaacatgaattgttattgggaagaacaacaaatagatagatgatcacaccaaacttc |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5288564 |
atcgagaacgatgataacgagacggttaattgaaggtttggtccaacatgaattgttattgggaagaacaacaaatagatagatgatcacaccaaacttc |
5288663 |
T |
|
| Q |
404 |
taataaaaagaacaaatactaaatgaatggaaacattttccttgacaaaatataatgaatgacatggaacacttaaaaagaacacaagatatcaaaattg |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5288664 |
taataaaaagaacaaatactaaatgaatggaaacattttccctgacaaaatataatgaatgacatggaacacttaaaaagaacacaagatatcaaaattg |
5288763 |
T |
|
| Q |
504 |
actttaatttgtttcaaagacatattggcac-aacaaatataggattgtacatggtatttgcacatcaacatgtttgctgctatattcagaatctgttat |
602 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5288764 |
actttaatttgtttcaaagacatattggcacaaacaaatataggattgtacatggtatttgcacatcaacatgtttgctgctatattcagaatctgttat |
5288863 |
T |
|
| Q |
603 |
gcagatttct |
612 |
Q |
| |
|
|||||||||| |
|
|
| T |
5288864 |
gcagatttct |
5288873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 72 - 404
Target Start/End: Complemental strand, 8035081 - 8034753
Alignment:
| Q |
72 |
attcatcaacggttttatttctatgacataaaaagtaagtatataatcaacttaactataacaaaaatcgaaatcaacaacattacaagtagtaaaacag |
171 |
Q |
| |
|
||||||| ||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||| |||| |
|
|
| T |
8035081 |
attcatccacgattttatttctatgacatttcaagtaagtatataatcaactttactataacaaaaattgaaatcaacaacatttcaagtagtaatacag |
8034982 |
T |
|
| Q |
172 |
agatcagtaactaaccttgaaagaaggtactgggagcaacaaaatcaaacctaaaaatatagcataacacagttaattaatggtaaattggtaatggtgg |
271 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
8034981 |
agatcagtaaccaaccttgaaagaaggtactgggagcaacaaaatcaaacctaagaacatagcataacacagttaattaattgtaaattgataatggtgg |
8034882 |
T |
|
| Q |
272 |
ttgcgatcgacgagtgttgagtacatgagagtatcgagaacgatgataacgagacggttaattgaaggtttggtccaacatgaattgttattgggaagaa |
371 |
Q |
| |
|
||| |||| ||||||||||| ||| |||||| |||| |||||||| ||||||||||||||||| |||||||||||||||| |||||| | |||||| |
|
|
| T |
8034881 |
ttgtgatcaacgagtgttgaatacttgagagcatcgggaacgatggtaacgagacggttaattaaaggtttggtccaacaggaattg----ggagaagaa |
8034786 |
T |
|
| Q |
372 |
caacaaatagatagatgatcacaccaaacttct |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
8034785 |
caacaaatagatagatgatcacaccaaacttct |
8034753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 179 - 348
Target Start/End: Original strand, 51380100 - 51380273
Alignment:
| Q |
179 |
taactaaccttgaaagaaggtactgggagcaacaaaatcaaacctaaaaatatagcataacacagttaattaatggtaaattggtaatggtggt---tgc |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| | || | || | |||||||||||| |||||||||||| |||| ||| |
|
|
| T |
51380100 |
taactaaccttgaaagaaggtactgggagcaacaaaatcaaacctaaaac-acagaaaaaaa--gttaattaatggaaaattggtaatgctggtagttgc |
51380196 |
T |
|
| Q |
276 |
gatcgacg----agtgttgagtacatgagagtatcgagaacgatgataacgagacggttaattgaaggtttggtcca |
348 |
Q |
| |
|
||| |||| |||||||||||| | |||| |||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
51380197 |
gatggacggacgagtgttgagtacctaagagcatcgagaacgatgataacgagacggttaattgcaggtttggtcca |
51380273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 405 - 571
Target Start/End: Complemental strand, 42966069 - 42965887
Alignment:
| Q |
405 |
aataaaaagaacaaatactaaatgaatggaaacattttccttgacaaaatataatgaatgacatggaacactt---------------aaaaagaacaca |
489 |
Q |
| |
|
||||||||| |||||||||| ||||||| ||| ||||| |||||||||||||||| ||||||||||||||||| |||| ||| ||| |
|
|
| T |
42966069 |
aataaaaaggacaaatactagatgaatgaaaatatttttcttgacaaaatataataaatgacatggaacacttctatctcccctaaaaaaaacgaataca |
42965970 |
T |
|
| Q |
490 |
agatatcaaaattgactttaatttgtttcaaagacat-attggcacaacaaatataggattgtacatggtatttgcacatcaa |
571 |
Q |
| |
|
|| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||| |||||||||||||| |
|
|
| T |
42965969 |
agctatctaaattgactttaatttgtttcaaagacatgattggcacaacaaatataggactgcccatgatatttgcacatcaa |
42965887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 4 - 78
Target Start/End: Original strand, 51379947 - 51380021
Alignment:
| Q |
4 |
gcaatagctttgaaagtcctagtggaagacgatcgtgaagatgatatgttattcaaaactttcagtttattcatc |
78 |
Q |
| |
|
||||||||||| ||| |||||| |||||| | |||||| ||||| ||||||||||||||||| | ||||| |||| |
|
|
| T |
51379947 |
gcaatagctttaaaaatcctagcggaagagggtcgtgaggatgacatgttattcaaaactttgaatttatccatc |
51380021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University