View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6803_high_9 (Length: 223)
Name: NF6803_high_9
Description: NF6803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6803_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 4 - 201
Target Start/End: Original strand, 20339657 - 20339854
Alignment:
| Q |
4 |
aatgatattgctacagaattgcatctttaataacatagccctcgtatgttaccggtggtgtagggttgtattgagggcagcatggttgaaggttgttgca |
103 |
Q |
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| T |
20339657 |
aatgatattgctacagaattgcatctttaataacatagccctcgtatgttacctttggtgtagggttgtattgagggcagcacggttgaaggttgttgca |
20339756 |
T |
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| Q |
104 |
gcacacttcaacgttggtcagcttctaggtagtgtcgggtgtgagcttccgtgactttggttcgcatcggtgtgagcttccgtctgctgcagttatgt |
201 |
Q |
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| T |
20339757 |
gcccagttcaacgttggtcagcttctaggtagcgtcgggtgtgagcttccgttactttggttcgcatcggtgtgagcttccgtctgctgcagttatgt |
20339854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 20373823 - 20373733
Alignment:
| Q |
26 |
atctttaataacatagccctcgtatgttaccggtggtgtagggttgtattgagggcagcatggttgaaggttgttgcagcacacttcaacgtt |
118 |
Q |
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| T |
20373823 |
atctttaataacatagccctc--atgttacctgtggtgtagggttgtattcatggcagcacggttgaaaattgttgcagcacagtttaacgtt |
20373733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 126
Target Start/End: Complemental strand, 20140160 - 20140036
Alignment:
| Q |
3 |
caatgatattgctacagaattgcatctttaataacatagccctcgtatgttaccggtgg---tgtagggttgtattgagggcagcatggttgaaggttgt |
99 |
Q |
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| T |
20140160 |
caatgatattgctatagaatctactctttaataacataaccctc--atgtcacctgtgggattgtagggttgtattcatgggagcacaattgaaggttac |
20140063 |
T |
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| Q |
100 |
tgcagcacacttcaacgttggtcagct |
126 |
Q |
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| T |
20140062 |
tgcagcacacttcaacgttgatcagct |
20140036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 104
Target Start/End: Complemental strand, 20132929 - 20132831
Alignment:
| Q |
4 |
aatgatattgctacagaattgcatctttaataacatagccctcgtatgttaccggtggtgtagggttgtattgagggcagcatggttgaaggttgttgca |
103 |
Q |
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| T |
20132929 |
aatgatattgctatagaatccaacctttaataacatagccctc--atgttacattttgtgtagggttgtattcatgggagcacaattgaaggttgttgca |
20132832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 15963143 - 15963190
Alignment:
| Q |
79 |
ggcagcatggttgaaggttgttgcagcacacttcaacgttggtcagct |
126 |
Q |
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| T |
15963143 |
ggcagcatggttgaaagttgttgcagcacacttcaacgttgatcagct |
15963190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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