View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6803_low_1 (Length: 834)
Name: NF6803_low_1
Description: NF6803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6803_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 681; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 22 - 813
Target Start/End: Complemental strand, 45733280 - 45732499
Alignment:
| Q |
22 |
ttcgacactgacacgactccgacacatataaattacattgaatcatgtgattttctcatattatatattattattggtgtcggcgtat------tcctgt |
115 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
45733280 |
ttcgactctgacacgactccgacacatataaattacattgaatcatgtgattttctcatattatatattattattggtgtcggcgtatctctgttcctgt |
45733181 |
T |
|
| Q |
116 |
cgtgtccggtcatgtttcatagctttcttctgttttgaatgtgattcttataataatcattgatcataggttcgtgagttggagaatattccacacttca |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45733180 |
cgtgtccggtcatgtttcatagctttcttctgttttgaatgtgattcttataataatcattgatcataggttcgtgagttggagaatattccacacttca |
45733081 |
T |
|
| Q |
216 |
acgctggaagaggttctgttcttaccaacaaaggcacggttgaaatggaagcttctattatggatggaaacactatgaaatgtggtgctgtttctggtct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45733080 |
acgctggaagaggttctgttcttaccaacaaaggcacggttgaaatggaagcttctattatggatggaaacactatgaaatgtggtgctgtttctggtct |
45732981 |
T |
|
| Q |
316 |
tagcaccgttgtcaatgctgtttctttggctcgtttggttatggataatactcctcatatttatttagcatttgatggagctgaggattttgcaagacaa |
415 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45732980 |
tagcaccgttgtcaatgctatttctttggctcgtttggttatggataatactcctcatatttatttagcttttgatggagctgaggattttgcaagacaa |
45732881 |
T |
|
| Q |
416 |
caagttggtttatttcttttccaatctcattttcttaagttttcacgtgtaggacatgtttggattcacttatttaagtttattccctaacataatcatt |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45732880 |
caagttggtttatttcttttccaatctcattttcttaagttttcacgtgtaggacatgtttggattcacttatttaagtttattccctaacataatcatt |
45732781 |
T |
|
| Q |
516 |
ttggataccgtttgtgggaacttatagggataatttacgacatgttcatatgatgttttcagcttatttccattaagctctcgaggatatcttatatgga |
615 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
45732780 |
ttggataccgtttatgggaacttatagaaataatttacgacatgttcatatgatgttttcagcttatttcca-taagctctcgaggatatcttatatgga |
45732682 |
T |
|
| Q |
616 |
aaccgtttacttttatgttatttcttgttgcagaaatgacttacacataaacacttattgatgcatgtttatgttatacatgtttagttaagttatttat |
715 |
Q |
| |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
45732681 |
aactgtttacttttatgctatttcttgttgcagaaatgacttacacataaacacttattg---------------atacatgtttagttaagttatttat |
45732597 |
T |
|
| Q |
716 |
ccaaacaaaactttaatataacataacaacgttattgtataaccaatgttttcaatcacgatagtggttgaagtcgcgtaagatacttgattgatatt |
813 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
45732596 |
ccaaacaaaactttaatataacataacaacgttattgtataaccaatgttttcaatcacgatagtggttgaagtcgcgtatgatacttgattgatatt |
45732499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 126 - 449
Target Start/End: Complemental strand, 45738640 - 45738317
Alignment:
| Q |
126 |
catgtttcatagctttcttctgttttgaatgtgattcttataataatcattgatcataggttcgtgagttggagaatattccacacttcaacgctggaag |
225 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45738640 |
catgtttcatagctttcttctgttttgaatgtgattcttataataatcattgttcataggttcgtgagttggagaatattccacacttcaacgctggaag |
45738541 |
T |
|
| Q |
226 |
aggttctgttcttaccaacaaaggcacggttgaaatggaagcttctattatggatggaaacactatgaaatgtggtgctgtttctggtcttagcaccgtt |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |
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|
| T |
45738540 |
aggttctgttcttaccaacaaaggcacggttgaaatggaagcttctattatggatggaaacactatgaaatgtggtgctgtttctggtcttactactgtc |
45738441 |
T |
|
| Q |
326 |
gtcaatgctgtttctttggctcgtttggttatggataatactcctcatatttatttagcatttgatggagctgaggattttgcaagacaacaagttggtt |
425 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45738440 |
gttaatgctgtttctttggctcgtttggttatggacaatacgcctcatatttatttggcttttgatggagctgaggattttgcaagacaacaagttggtt |
45738341 |
T |
|
| Q |
426 |
tatttcttttccaatctcattttc |
449 |
Q |
| |
|
||||||||||| | ||||||||| |
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|
| T |
45738340 |
tatttcttttcttaactcattttc |
45738317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 533 - 785
Target Start/End: Complemental strand, 45738167 - 45737916
Alignment:
| Q |
533 |
gaacttatagggataatttacgacatgttcatatgatgttttcagcttatttccattaagctctc----gaggatatcttatatggaaaccgttt-actt |
627 |
Q |
| |
|
|||||||||| ||||||||||||| | ||||| ||||||||||||||||||||| ||||||||| |||||| ||||||||||||| |||| |||| |
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|
| T |
45738167 |
gaacttatagaaataatttacgacaagctcataagatgttttcagcttatttcca-taagctctcaaggaaggatagcttatatggaaacagtttgactt |
45738069 |
T |
|
| Q |
628 |
ttatgttatttcttgttgcagaaatgacttacacataaacacttattgatgcatgtttatgttatacatgtttagttaagttatttatccaaacaaaact |
727 |
Q |
| |
|
| ||||||||||||||| || ||||||||| |||||| || |||||||| || |||||||||||| | | | ||||||||||||||||||||||||| |
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|
| T |
45738068 |
tagtgttatttcttgttgtaggaatgacttatacataagcatttattgatacacgtttatgttataagcgctcaattaagttatttatccaaacaaaact |
45737969 |
T |
|
| Q |
728 |
ttaatataacataacaacgttattgtataaccaatgttttcaatcacgatagtggttg |
785 |
Q |
| |
|
||||| ||||| | ||| | ||||||||||||||||||||||||||| |||||| |
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|
| T |
45737968 |
ttaat-----ataacgatgttttagtataaccaatgttttcaatcacgataatggttg |
45737916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 547 - 588
Target Start/End: Original strand, 8469371 - 8469412
Alignment:
| Q |
547 |
aatttacgacatgttcatatgatgttttcagcttatttccat |
588 |
Q |
| |
|
|||||| |||||||||||| | |||||||||||||||||||| |
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|
| T |
8469371 |
aatttatgacatgttcataagttgttttcagcttatttccat |
8469412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 44482300 - 44482239
Alignment:
| Q |
24 |
cgacactgacacgactccgacacatataaattacattgaatcatgtgattttctcatattata |
86 |
Q |
| |
|
|||||| |||||||| ||||||||||||| ||||| ||||| |||||||||||||| |||||| |
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|
| T |
44482300 |
cgacaccgacacgacaccgacacatataa-ttacactgaattatgtgattttctcaaattata |
44482239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 6427415 - 6427360
Alignment:
| Q |
29 |
ctgacacgactccgacacatataaattacattgaatcatgtgattttctcatattat |
85 |
Q |
| |
|
|||||||||| || |||||||||| ||||||||||| |||||||||||||| ||||| |
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|
| T |
6427415 |
ctgacacgacaccaacacatataa-ttacattgaattatgtgattttctcaaattat |
6427360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 25361956 - 25361896
Alignment:
| Q |
24 |
cgacactgacacgactccgacacatataaattacattgaatcatgtgattttctcatattat |
85 |
Q |
| |
|
|||||| |||||||| | ||||||||||| ||||| ||||| |||||||||||||| ||||| |
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|
| T |
25361956 |
cgacaccgacacgacactgacacatataa-ttacactgaattatgtgattttctcaaattat |
25361896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 3966573 - 3966513
Alignment:
| Q |
24 |
cgacactgacacgactccgacacatataaattacattgaatcatgtgattttctcatattat |
85 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| ||||| ||||||||||||| ||||| |
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|
| T |
3966573 |
cgacactgacacgacaccgacacatat-aattacactgaattgtgtgattttctcaaattat |
3966513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 27764776 - 27764715
Alignment:
| Q |
25 |
gacactgacacgactccgacacatataaattacattgaatcatgtgattttctcatattata |
86 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||||||||||||| || | ||||||||| |||||| |
|
|
| T |
27764776 |
gacactgacatgacaccgacccatataaattacattgaattatataattttctcaaattata |
27764715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 9617494 - 9617444
Alignment:
| Q |
34 |
acgactccgacacatataaattacattgaatcatgtgattttctcatattat |
85 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| |||||||||||||| ||||| |
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|
| T |
9617494 |
acgacaccgacacatataa-ttacattgaattatgtgattttctcaaattat |
9617444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 9025490 - 9025543
Alignment:
| Q |
31 |
gacacgactccgacacatataaattacattgaatcatgtgattttctcatattat |
85 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||||| |||||||||||||| ||||| |
|
|
| T |
9025490 |
gacacgacaccgacacatataa-ttacactgaattatgtgattttctcaaattat |
9025543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 85
Target Start/End: Complemental strand, 9629442 - 9629393
Alignment:
| Q |
35 |
cgactccgacacatataaattacattgaatcatgtgattttctcatattat |
85 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| |||||||||||||| ||||| |
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|
| T |
9629442 |
cgacaccgacacatataa-ttacattgaattatgtgattttctcaaattat |
9629393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 30866148 - 30866193
Alignment:
| Q |
39 |
tccgacacatataaattacattgaatcatgtgattttctcatattat |
85 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
30866148 |
tccgacacatataa-ttacattgaattatgtgattttctcaaattat |
30866193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 26562761 - 26562705
Alignment:
| Q |
22 |
ttcgacactgacacgactccgacacatataaattacattgaatcatgtgattttctca |
79 |
Q |
| |
|
|||||||| |||||||| |||||||||||| ||||| ||||| |||||||||||||| |
|
|
| T |
26562761 |
ttcgacaccgacacgacatcgacacatataa-ttacactgaattatgtgattttctca |
26562705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 554 - 611
Target Start/End: Complemental strand, 20672819 - 20672763
Alignment:
| Q |
554 |
gacatgttcatatgatgttttcagcttatttccattaagctctcgaggatatcttata |
611 |
Q |
| |
|
|||||||||||| | |||||||||||||||| || ||||||||| |||||| |||||| |
|
|
| T |
20672819 |
gacatgttcataagctgttttcagcttattttca-taagctctccaggatagcttata |
20672763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 85
Target Start/End: Original strand, 31236582 - 31236626
Alignment:
| Q |
40 |
ccgacacatataaattacattgaatcatgtgattttctcatattat |
85 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
31236582 |
ccgacacatataa-ttacattgaattatgtgattttctcaaattat |
31236626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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