View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6803_low_10 (Length: 277)
Name: NF6803_low_10
Description: NF6803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6803_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 275
Target Start/End: Original strand, 20339395 - 20339651
Alignment:
| Q |
15 |
catcatatctataatactctgtattgggattgtttcttacatcgttttaaacaaaatttaagcatgatagtatgcatcagtattaatttcatttaattca |
114 |
Q |
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| T |
20339395 |
catcatatctataatactctttattgggattgttttttccatcgtttgaaacaaaatttaagcatgatagtatgcatcagtattaatttcatttacttca |
20339494 |
T |
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| Q |
115 |
aaattttattgctaatactatgcacaagtgttcctatttccacagttagatcttggttatctatatataaataattgaagtataaagatattttgaaaat |
214 |
Q |
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| T |
20339495 |
aaattttattgctaatactatgcacaagtgttcctatttccacagttagatcttggttatc----tataaataattgaagtataaagatattttgaaaat |
20339590 |
T |
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| Q |
215 |
tattatatgttgaatattcttgcaaagcaagaattatcactcattatttatttttctatac |
275 |
Q |
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| T |
20339591 |
tattatatgttgaatattcttgcaaagcaagaattatcactcattatttatttttctatac |
20339651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 236
Target Start/End: Original strand, 20442382 - 20442432
Alignment:
| Q |
187 |
aattgaagtataaagata-ttttgaaaattattatatgttgaatattcttg |
236 |
Q |
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| T |
20442382 |
aattgaagtataaagatagttttgaaaattaatatatattgaatattcttg |
20442432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 236
Target Start/End: Complemental strand, 20373947 - 20373897
Alignment:
| Q |
187 |
aattgaagtataaagatattt-tgaaaattattatatgttgaatattcttg |
236 |
Q |
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| T |
20373947 |
aattgaagtttaaagatatttctgcaaattaatatatgttgaatattcttg |
20373897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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