View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6803_low_11 (Length: 245)
Name: NF6803_low_11
Description: NF6803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6803_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 1464043 - 1463814
Alignment:
| Q |
1 |
ccttgttttccaagatattgttccatgcctttccactcagaatataacggattgcgattttcagtaaatcaagagggatgtaggtcaccagactgtacaa |
100 |
Q |
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| T |
1464043 |
ccttgttttccaagatattgttccatgcctttccactcagaatataacggattgcgattttcagtaaatcaagagggatgtaggtcaccagactgtacaa |
1463944 |
T |
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| Q |
101 |
ccagattacgccggcccaaccccatcccattcccttaattcttgcaaattcccaatctgcatacactgctatgactgttgcaacctgtcaagttacaaaa |
200 |
Q |
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| T |
1463943 |
ccagattacgccggcccaaccccatcccattcccttaattcttgcaaattcccaatctgcatacacggctatgactgttgcaacctgtcaagttacaaaa |
1463844 |
T |
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| Q |
201 |
caaactattgttaccacaacagaaagaaaa |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
1463843 |
caaactattgttaccacaacagaaagaaaa |
1463814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 1495716 - 1495919
Alignment:
| Q |
1 |
ccttgttttccaagatattgttccatgcctttccactcagaatataacggattgcgattttcagtaaatcaagagggatgtaggtcaccagactgtacaa |
100 |
Q |
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| T |
1495716 |
ccttattttccaaaagattatcccaagccttcccgcttagaaaatagcggattgcgaatttgagtaaatcaagagggatataagttaccaagctatacaa |
1495815 |
T |
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| Q |
101 |
ccagattacgccggcccaaccccatcccattcccttaattcttgcaaattcccaatctgcatacactgctatgactgttgcaacctgtcaagttacaaaa |
200 |
Q |
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| T |
1495816 |
ccaaatcacaccagcccaaccccatcccattccctttattcttgcaaatccccaattagcatacactgctataaatgttgcaatctgtcaaataacagaa |
1495915 |
T |
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| Q |
201 |
caaa |
204 |
Q |
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|||| |
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| T |
1495916 |
caaa |
1495919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 163
Target Start/End: Complemental strand, 1491617 - 1491523
Alignment:
| Q |
69 |
tcaagagggatgtaggtcaccagactgtacaaccagattacgccggcccaaccccatcccattcccttaattcttgcaaattcccaatctgcata |
163 |
Q |
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| T |
1491617 |
tcaagagggatataggttatcaaactatacaaccaaattacgtcgacctaaccccgtcccattgcctttattcttgcaaattcccaatttgcata |
1491523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 1490927 - 1491009
Alignment:
| Q |
72 |
agagggatgtaggtcaccagactgtacaaccagattacgccggcccaaccccatcccattcccttaattcttgcaaattccca |
154 |
Q |
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| T |
1490927 |
agagggaaataggttaccaaactgtacaaccagattatctcggcctaactccatatcattctctttattcttgcaaattccca |
1491009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 26791759 - 26791536
Alignment:
| Q |
1 |
ccttgttttccaagatattgttccatgcctttccactcagaatataacggattgcgattttcagtaaatcaagagggatgtaggtcaccagactgtacaa |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||||| |||| |||||||||||| ||||| |||| ||||||||| |
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| T |
26791759 |
ccttgttttccaaaatattgttccatgcctttccactctgaatatagcggattgcaattttgagtatatcaagagggatataggttaccaaactgtacaa |
26791660 |
T |
|
| Q |
101 |
ccagattacgccggcccaaccccatcccattcccttaattcttgcaaattcccaatctgcatacactgctatgactgttgcaacctgtcaagttacaaaa |
200 |
Q |
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| T |
26791659 |
ccaaattacaccagcccaaccccatcccattccttgtattcttgcaaattcccaattagcatacactgctataactgttgcaacctgtcaa-ttacataa |
26791561 |
T |
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| Q |
201 |
caaactattgttaccacaacagaaa |
225 |
Q |
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| T |
26791560 |
caaactattgttaccgcaacagaaa |
26791536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 33 - 148
Target Start/End: Complemental strand, 50277606 - 50277491
Alignment:
| Q |
33 |
ccactcagaatataacggattgcgattttcagtaaatcaagagggatgtaggtcaccagactgtacaaccagattacgccggcccaaccccatcccattc |
132 |
Q |
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| T |
50277606 |
ccacttagaacatagcggattacgaatttgagtatatcaagggggatatatgtcactatactgtacatccagattacaccagcccaaccccatcccattc |
50277507 |
T |
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| Q |
133 |
ccttaattcttgcaaa |
148 |
Q |
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| T |
50277506 |
ccttaattcttgcaaa |
50277491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 45196576 - 45196634
Alignment:
| Q |
114 |
gcccaaccccatcccattcccttaattcttgcaaattcccaatctgcatacactgctat |
172 |
Q |
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| T |
45196576 |
gcccaaccccatccaattcctttcatacttgcaaactcccaatttgcatacacagctat |
45196634 |
T |
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