View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6803_low_2 (Length: 727)

Name: NF6803_low_2
Description: NF6803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6803_low_2
NF6803_low_2
[»] chr4 (13 HSPs)
chr4 (19-714)||(4350381-4351072)
chr4 (530-714)||(4126598-4126782)
chr4 (523-709)||(4333202-4333388)
chr4 (561-714)||(4342630-4342783)
chr4 (562-713)||(4358099-4358250)
chr4 (562-714)||(4323263-4323415)
chr4 (453-699)||(4330067-4330312)
chr4 (554-698)||(4135721-4135865)
chr4 (21-147)||(4332816-4332942)
chr4 (555-694)||(25567605-25567744)
chr4 (561-674)||(6535840-6535953)
chr4 (99-147)||(4323642-4323690)
chr4 (561-630)||(6713477-6713546)
[»] chr6 (21 HSPs)
chr6 (562-694)||(5105059-5105191)
chr6 (562-687)||(5423436-5423561)
chr6 (562-687)||(5368143-5368268)
chr6 (562-682)||(5356815-5356935)
chr6 (562-687)||(5069265-5069390)
chr6 (562-695)||(5184132-5184265)
chr6 (562-714)||(5174555-5174707)
chr6 (562-686)||(5075920-5076044)
chr6 (556-714)||(5093724-5093882)
chr6 (553-714)||(5149123-5149284)
chr6 (562-695)||(5159681-5159814)
chr6 (555-712)||(5341376-5341533)
chr6 (562-714)||(5276394-5276546)
chr6 (562-684)||(5394732-5394854)
chr6 (595-695)||(5134091-5134191)
chr6 (562-686)||(5444775-5444899)
chr6 (581-710)||(5431115-5431244)
chr6 (562-687)||(5348094-5348219)
chr6 (560-681)||(5692419-5692540)
chr6 (87-136)||(5076905-5076954)
chr6 (562-595)||(5262420-5262453)
[»] chr3 (1 HSPs)
chr3 (562-684)||(48015496-48015618)
[»] scaffold0294 (1 HSPs)
scaffold0294 (588-670)||(10870-10952)


Alignment Details
Target: chr4 (Bit Score: 527; Significance: 0; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 19 - 714
Target Start/End: Original strand, 4350381 - 4351072
Alignment:
Q  19 agtttggtgaagcttttcaaaaagtattgaacaaagttttaaaaggagatgaattcatggtaccaaagtggagagacgcacttcgtgatgctgctggcct 118  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4350381 agtttggtgaagcttttcaaaaagcattgaacaaagttttaaaaggagatgaattcatggtaccaaagtggagagacgcacttcgtgatgctgctggcct 4350480  T
Q  119 tgcaggatttgttgtcctgaattccaggtctagcttattatgctttgttaattaannnnnnngagttaaatacacttttcacatgccatttgaacaaatt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||||| ||||||||    
T  4350481 tgcaggatttgttgtcctgaattccaggtctagcttattatgctttgttaattaatttttttgagttaaatacacttttcccatgccatttaaacaaatt 4350580  T
Q  219 tcgatttatcccatttagttaaccttgtaatttaaagattattttttgttagactgtcagtggtttccaattttaggactaattgactctcagccccctg 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||    
T  4350581 tcgatttatcccatttagttaaccttgtaatttaaagattattttttgttagactgtc-gtggtttccaattttaggactaattgactctc-ggcccctg 4350678  T
Q  319 ttaggataatcaacttaattcgcacgtacactttgcttatttggtcatcactttcaatctaattgcgcctttttgtaatgattcagctttacacacacaa 418  Q
    |||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4350679 ttaggataatcaacttaatttgcacgtacagtttgcttctttggtcatcactttcaatctaattgcgcctttttataatgattcagctttacacacacaa 4350778  T
Q  419 tcaaacaataannnnnnnactcgaattccccctgtacttttgacacaggcatacataggtaattacttatacataaacacataaatatacataaacccat 518  Q
    || ||||||||        |||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4350779 tccaacaataaattttttcctcggattccccctatacttttgacacatgcatacataggtaattacttatacataaacacataaatatacataaacccat 4350878  T
Q  519 atgctgtgtgtatatgtaaatttaccctttctttgttttttaataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttga 618  Q
    |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||    
T  4350879 atg--ttgtgtatatgtaaatttaccctttctttgttttttaataggaatgaaagtgaggttatcaagggtattgttgaaaatattacacgtttgtttga 4350976  T
Q  619 caagacagacttgttcattgctgataatccggtgggagtcgaatctcgagtgcaagatatgattcaacttctagacactcaccaatcaaatgatgt 714  Q
    ||||| |||||| ||||||| ||||||||| ||||||||||||||||  ||||||||||||||| ||||||||||||||||||||||||| |||||    
T  4350977 caagatagacttattcattgttgataatcctgtgggagtcgaatctcaggtgcaagatatgattaaacttctagacactcaccaatcaaaagatgt 4351072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 530 - 714
Target Start/End: Complemental strand, 4126782 - 4126598
Alignment:
Q  530 atatgtaaatttaccctttctttgttttttaataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagact 629  Q
    ||||| ||||||||| ||||||||| |||| ||||||| ||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  4126782 atatgcaaatttaccatttctttgtattttcataggaacgaatgtgaggttatcaaggatattgttgaaaatgttacaaatttgcttgacaagacagact 4126683  T
Q  630 tgttcattgctgataatccggtgggagtcgaatctcgagtgcaagatatgattcaacttctagacactcaccaatcaaatgatgt 714  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  4126682 tgttcattgctgataatcctgtcggagtcgaatctcgagtgcaagatatgattcaacttctagacactcaacagtcaaatgatgt 4126598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 523 - 709
Target Start/End: Original strand, 4333202 - 4333388
Alignment:
Q  523 tgtgtgtatatgtaaatttaccctttctttgttttttaataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaag 622  Q
    ||||||| | ||||||| | || |||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||    
T  4333202 tgtgtgtgtgtgtaaatgttccatttctttgttttttcataggaacgaaagtgaggtcatcaaggatattgttgaaaatgttgcacgtttgcttgacaag 4333301  T
Q  623 acagacttgttcattgctgataatccggtgggagtcgaatctcgagtgcaagatatgattcaacttctagacactcaccaatcaaat 709  Q
    || |||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||    
T  4333302 actgacttgttcattgctgatcatccggtaggagtcgaatctcgagtacaagatatgattcaacttctagacactcaactatcaaat 4333388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 561 - 714
Target Start/End: Original strand, 4342630 - 4342783
Alignment:
Q  561 ataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcga 660  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  4342630 ataggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggagtcga 4342729  T
Q  661 atctcgagtgcaagatatgattcaacttctagacactcaccaatcaaatgatgt 714  Q
     ||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  4342730 ttctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgt 4342783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 562 - 713
Target Start/End: Original strand, 4358099 - 4358250
Alignment:
Q  562 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcgaa 661  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||     
T  4358099 taggaatgaaagtgaggttatcagggatattgttgaaaatgttactcgtttgcttgacaagacagacttgttcattgctgataatccagtaggagtcgat 4358198  T
Q  662 tctcgagtgcaagatatgattcaacttctagacactcaccaatcaaatgatg 713  Q
    |||||||||||||||||||||||||| ||||| ||||| |||||||| ||||    
T  4358199 tctcgagtgcaagatatgattcaactcctagaaactcaacaatcaaacgatg 4358250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 562 - 714
Target Start/End: Complemental strand, 4323415 - 4323263
Alignment:
Q  562 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcgaa 661  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||| |||||  ||||     
T  4323415 taggaacgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttactggacaagacagacttgttcgttgctgataatcctgtgggtatcgat 4323316  T
Q  662 tctcgagtgcaagatatgattcaacttctagacactcaccaatcaaatgatgt 714  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||||    
T  4323315 tctcgagtgcaagatatgattcaacttctagacactcaacaaacaaatgatgt 4323263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 453 - 699
Target Start/End: Original strand, 4330067 - 4330312
Alignment:
Q  453 tacttttgacacaggcatacataggtaattacttatacataaacacataaatatacataaacccatatgctgtgtgtatatgtaaatttaccctttcttt 552  Q
    ||||||||||||| |||||||||||| ||||||||||  |||||||||| |||| |||| |   ||   |    |||| |||||||| |||| | |||||    
T  4330067 tacttttgacacatgcatacataggtcattacttatatgtaaacacatagatatccatatatgtatggaca---tgtaaatgtaaatgtaccatctcttt 4330163  T
Q  553 gttttt--taataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccgg 650  Q
    ||||||  | ||||||||||||| || ||||||||| ||||||||||||||||||||| ||| ||||| |||| |||||| |||||||||||||||||||    
T  4330164 gtttttctttataggaatgaaagagaagttatcaagaatattgttgaaaatgttacactttttcttgataagatagacttattcattgctgataatccgg 4330263  T
Q  651 tgggagtcgaatctcgagtgcaagatatgattcaacttctagacactca 699  Q
    ||| | |  ||||||||||| |||| |||||||||||||||||||||||    
T  4330264 tggaaattaaatctcgagtgtaagagatgattcaacttctagacactca 4330312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 554 - 698
Target Start/End: Complemental strand, 4135865 - 4135721
Alignment:
Q  554 ttttttaataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgg 653  Q
    |||||| ||||||| |||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||  |||| ||      
T  4135865 ttttttcataggaacgaaagtgaggatatcaaggatattgttgaaaaagttacacatttgcttgacaagacagacctgttcattgctgaccatccagtta 4135766  T
Q  654 gagtcgaatctcgagtgcaagatatgattcaacttctagacactc 698  Q
    |||||||||||||||||| ||||||||||||||| || |||||||    
T  4135765 gagtcgaatctcgagtgctagatatgattcaactactggacactc 4135721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 21 - 147
Target Start/End: Original strand, 4332816 - 4332942
Alignment:
Q  21 tttggtgaagcttttcaaaaagtattgaacaaagttttaaaaggagatgaattcatggtaccaaagtggagagacgcacttcgtgatgctgctggccttg 120  Q
    |||||| |||||||||||||  | ||||||| |||||||||||  |||||||||||||| ||||||||||||||||| |||||| ||||||||||| |||    
T  4332816 tttggtaaagcttttcaaaatcttttgaacagagttttaaaagtggatgaattcatggtgccaaagtggagagacgcgcttcgtaatgctgctggcattg 4332915  T
Q  121 caggatttgttgtcctgaattccaggt 147  Q
    ||||||||||||| || ||||||||||    
T  4332916 caggatttgttgttctaaattccaggt 4332942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 555 - 694
Target Start/End: Original strand, 25567605 - 25567744
Alignment:
Q  555 tttttaataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtggg 654  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||  |    |||||||| ||||||||| ||||| |  ||||| ||||||| |||||    
T  25567605 tttttaacaggaatgaaagtgaggctatcaaggatattgttgaaaaaatcgtgcgtttgctagacaagacacacttgcttgttgctaataatccagtggg 25567704  T
Q  655 agtcgaatctcgagtgcaagatatgattcaacttctagac 694  Q
    ||| ||| |||||||| || ||||||||||||| ||||||    
T  25567705 agttgaacctcgagtggaaaatatgattcaactgctagac 25567744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 561 - 674
Target Start/End: Complemental strand, 6535953 - 6535840
Alignment:
Q  561 ataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcga 660  Q
    |||||||||||||||| | ||||||| || |||||||| ||||||| |||||||| || | || ||| || ||  |||||||  |||| |||||| | ||    
T  6535953 ataggaatgaaagtgatgatatcaagaatgttgttgaacatgttactcgtttgctagataggaaagagttatttgttgctgaacatccagtgggaattga 6535854  T
Q  661 atctcgagtgcaag 674  Q
    |||||| |||||||    
T  6535853 atctcgtgtgcaag 6535840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 4323690 - 4323642
Alignment:
Q  99 cttcgtgatgctgctggccttgcaggatttgttgtcctgaattccaggt 147  Q
    ||||||| ||| ||||||||||| |||||||||||||| ||||||||||    
T  4323690 cttcgtgttgcggctggccttgctggatttgttgtcctaaattccaggt 4323642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 561 - 630
Target Start/End: Original strand, 6713477 - 6713546
Alignment:
Q  561 ataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagactt 630  Q
    |||||||||||||||  | ||||||| |||| |||||| |||| || |||||||| || |||||||||||    
T  6713477 ataggaatgaaagtgcagatatcaagaatatagttgaacatgtcacccgtttgctagataagacagactt 6713546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 2e-42; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 562 - 694
Target Start/End: Complemental strand, 5105191 - 5105059
Alignment:
Q  562 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcgaa 661  Q
    |||||||||||||||||||||||||||||||||| | ||||| || | |||||||||||||||||| ||||| |||||| |||||||||||||||| |||    
T  5105191 taggaatgaaagtgaggttatcaaggatattgttaacaatgtaacgcatttgcttgacaagacagatttgtttattgctaataatccggtgggagttgaa 5105092  T
Q  662 tctcgagtgcaagatatgattcaacttctagac 694  Q
    |||||||| ||||||||||||||||| ||||||    
T  5105091 tctcgagttcaagatatgattcaactgctagac 5105059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 562 - 687
Target Start/End: Original strand, 5423436 - 5423561
Alignment:
Q  562 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcgaa 661  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||| |||  ||||||||||||||| ||||| |||||| ||||||| |||||||| |||    
T  5423436 taggaatgaaagtgaggctattaaggatattgttgaaaatgttacgcgtaagcttgacaagacagatttgtttattgctaataatcctgtgggagttgaa 5423535  T
Q  662 tctcgagtgcaagatatgattcaact 687  Q
    ||||||||||||||||||||||||||    
T  5423536 tctcgagtgcaagatatgattcaact 5423561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 562 - 687
Target Start/End: Original strand, 5368143 - 5368268
Alignment:
Q  562 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcgaa 661  Q
    ||||||||||||| ||| |||| |||||||||||||||||||||| |||  ||||||||||||||| ||||| |||||||||||||| |||||||| |||    
T  5368143 taggaatgaaagtaaggctatccaggatattgttgaaaatgttacgcgtaagcttgacaagacagaattgtttattgctgataatccagtgggagttgaa 5368242  T
Q  662 tctcgagtgcaagatatgattcaact 687  Q
    ||||||||||||| ||||||||||||    
T  5368243 tctcgagtgcaaggtatgattcaact 5368268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 562 - 682
Target Start/End: Complemental strand, 5356935 - 5356815
Alignment:
Q  562 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcgaa 661  Q
    ||||||||||||||| | |||||||||||||||| ||||| |||||||||||||||||||||||||||| ||  ||||| |||||||||||||||| |||    
T  5356935 taggaatgaaagtgaagctatcaaggatattgttaaaaatattacacgtttgcttgacaagacagacttatttgttgctaataatccggtgggagttgaa 5356836  T
Q  662 tctcgagtgcaagatatgatt 682  Q
    ||||| |||||||||||||||    
T  5356835 tctcgtgtgcaagatatgatt 5356815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 562 - 687
Target Start/End: Complemental strand, 5069390 - 5069265
Alignment:
Q  562 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcgaa 661  Q
    ||||||||||||||| |||||  |||||||||||||||||||||| |||  |||||||||| |||||||||| |||||| ||||||| |||||||| |||    
T  5069390 taggaatgaaagtgatgttatagaggatattgttgaaaatgttacgcgtaagcttgacaaggcagacttgtttattgctaataatccagtgggagttgaa 5069291  T
Q  662 tctcgagtgcaagatatgattcaact 687  Q
    ||||||||||| ||||||||||||||    
T  5069290 tctcgagtgcaggatatgattcaact 5069265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 562 - 695
Target Start/End: Complemental strand, 5184265 - 5184132
Alignment:
Q  562 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcgaa 661  Q
    |||||||||||||||||  ||||| || ||||||||||||||||||| |||||| | ||||||||| ||||||||||| |||||||||||||||||||||    
T  5184265 taggaatgaaagtgaggcaatcaaagacattgttgaaaatgttacacatttgctaggcaagacagatttgttcattgcggataatccggtgggagtcgaa 5184166  T
Q  662 tctcgagtgcaagatatgattcaacttctagaca 695  Q
    |||||||| | |||| |||||||| | |||||||    
T  5184165 tctcgagtacgagatgtgattcaattgctagaca 5184132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 562 - 714
Target Start/End: Original strand, 5174555 - 5174707
Alignment:
Q  562 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcgaa 661  Q
    ||||||||||||||| |  || ||| |||||||||| || ||| |||||||  |||||||||||||||||||  |||||||||||||||||||| |||||    
T  5174555 taggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattgacaagacagacttgtttgttgctgataatccggtgggactcgaa 5174654  T
Q  662 tctcgagtgcaagatatgattcaacttctagacactcaccaatcaaatgatgt 714  Q
    |||||||||||||||||||||||| | |||||||  || ||||| ||||||||    
T  5174655 tctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgt 5174707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 562 - 686
Target Start/End: Complemental strand, 5076044 - 5075920
Alignment:
Q  562 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcgaa 661  Q
    ||||||||||||||| |  ||| | ||||| || |||||| || |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  5076044 taggaatgaaagtgaagcaatcgacgatatagtggaaaatatttcacgtttgcttgacaagacagatttgttcattgctgataatccagtgggagtcgaa 5075945  T
Q  662 tctcgagtgcaagatatgattcaac 686  Q
    ||||||||  |||||||||||||||    
T  5075944 tctcgagtagaagatatgattcaac 5075920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 556 - 714
Target Start/End: Original strand, 5093724 - 5093882
Alignment:
Q  556 ttttaataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtggga 655  Q
    ||||||||||||||||| | |||  ||||||||||||||||||||  |||| | ||||||||| |||||||| ||||||||||||||||| || ||||||    
T  5093724 ttttaataggaatgaaaataaggccatcaaggatattgttgaaaaaattactcatttgcttgataagacagatttgttcattgctgataaacctgtggga 5093823  T
Q  656 gtcgaatctcgagtgcaagatatgattcaacttctagacactcaccaatcaaatgatgt 714  Q
    || |  ||||||||||||||| | ||| ||||  ||||||  || ||||||||||||||    
T  5093824 gttggttctcgagtgcaagatgttattgaactgttagacatccaacaatcaaatgatgt 5093882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 553 - 714
Target Start/End: Complemental strand, 5149284 - 5149123
Alignment:
Q  553 gttttttaataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtg 652  Q
    |||||| |||||||| ||||||||| | |||| | ||||||||||||| ||||| |  ||||| |||||||| ||||||||| ||||| ||||||| ||     
T  5149284 gtttttaaataggaacgaaagtgagatcatcaggaatattgttgaaaaagttactcacttgctagacaagaccgacttgttcgttgctcataatccagtc 5149185  T
Q  653 ggagtcgaatctcgagtgcaagatatgattcaacttctagacactcaccaatcaaatgatgt 714  Q
    ||||| ||| ||||||| ||||||||||||||||| |||||||  ||  |||||||||||||    
T  5149184 ggagttgaaactcgagtacaagatatgattcaactgctagacatccaaaaatcaaatgatgt 5149123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 562 - 695
Target Start/End: Complemental strand, 5159814 - 5159681
Alignment:
Q  562 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcgaa 661  Q
    ||||||| ||| | |||| ||||||||||||||||||||  |||| | ||||||||| |||||||| |||||||||||||||||||| |||||||| |      
T  5159814 taggaatcaaaataaggtcatcaaggatattgttgaaaaaattactcatttgcttgataagacagatttgttcattgctgataatcctgtgggagttggt 5159715  T
Q  662 tctcgagtgcaagatatgattcaacttctagaca 695  Q
    ||||||||||||||| | ||| |||| |||||||    
T  5159714 tctcgagtgcaagatgttattgaactgctagaca 5159681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 555 - 712
Target Start/End: Original strand, 5341376 - 5341533
Alignment:
Q  555 tttttaataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtggg 654  Q
    ||||| ||||||||||||| |||| |||||||||||| || ||||| ||||| || |||||| ||||||||||||||||  ||| ||||||||| | |||    
T  5341376 ttttttataggaatgaaagcgaggctatcaaggatatcgtcgaaaaagttacgcgcttgcttaacaagacagacttgtttgttgttgataatccagcggg 5341475  T
Q  655 agtcgaatctcgagtgcaagatatgattcaacttctagacactcaccaatcaaatgat 712  Q
     || ||||| ||| ||||||||||||||||||| || || |  || ||||||||||||    
T  5341476 ggttgaatcccgattgcaagatatgattcaactgcttgatatccaacaatcaaatgat 5341533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 562 - 714
Target Start/End: Original strand, 5276394 - 5276546
Alignment:
Q  562 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcgaa 661  Q
    ||||||||||||||| |  || ||| |||||||||| || ||| || ||||  |||||||||||  ||||||  ||||||||||||| |||||| || ||    
T  5276394 taggaatgaaagtgaagcgattaagaatattgttgacaaagtttcatgttttattgacaagacatgcttgtttgttgctgataatccagtgggactcaaa 5276493  T
Q  662 tctcgagtgcaagatatgattcaacttctagacactcaccaatcaaatgatgt 714  Q
    |||||||||||||||||||||| | | |||||||  || ||||| ||||||||    
T  5276494 tctcgagtgcaagatatgattccattgctagacatccaacaatctaatgatgt 5276546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 562 - 684
Target Start/End: Original strand, 5394732 - 5394854
Alignment:
Q  562 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcgaa 661  Q
    ||||||||||||||| |  ||||| || |||||||||||| || |||||||||||||||| ||||||||||| |||||| || |||| ||||| || |||    
T  5394732 taggaatgaaagtgacgcaatcaatgacattgttgaaaatatttcacgtttgcttgacaaaacagacttgtttattgctaattatccagtgggcgtggaa 5394831  T
Q  662 tctcgagtgcaagatatgattca 684  Q
    ||||| || | |||| |||||||    
T  5394832 tctcgggtacgagatgtgattca 5394854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 595 - 695
Target Start/End: Complemental strand, 5134191 - 5134091
Alignment:
Q  595 tgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcgaatctcgagtgcaagatatgattcaacttctagac 694  Q
    |||||||||||| |||||||||||||| | ||| ||||| |||||| ||||||| |||||||| ||||||||  ||| ||||||||||||| | ||||||    
T  5134191 tgaaaatgttacgcgtttgcttgacaaaatagatttgtttattgctaataatccagtgggagttgaatctcgtatgctagatatgattcaattgctagac 5134092  T
Q  695 a 695  Q
    |    
T  5134091 a 5134091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 562 - 686
Target Start/End: Original strand, 5444775 - 5444899
Alignment:
Q  562 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcgaa 661  Q
    ||||||||||||||||| | |||| | ||||||||| ||  || ||| ||||||| |||| ||||||||||| |||||  ||||||| |||||| | |||    
T  5444775 taggaatgaaagtgaggatgtcaaaggtattgttgacaacatttcacatttgcttaacaaaacagacttgtttattgcgaataatccagtgggaattgaa 5444874  T
Q  662 tctcgagtgcaagatatgattcaac 686  Q
    ||||||||| ||||| |||||||||    
T  5444875 tctcgagtgaaagatgtgattcaac 5444899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 581 - 710
Target Start/End: Original strand, 5431115 - 5431244
Alignment:
Q  581 atcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcgaatctcgagtgcaagatatga 680  Q
    ||||||||||||  ||||||  |||| | |||||||||||||| |||| |||||||||||||||| || |||||| | || |||||| |||||||| | |    
T  5431115 atcaaggatattactgaaaaaattactcatttgcttgacaagaaagacatgttcattgctgataagccagtgggaattgattctcgaatgcaagatgtta 5431214  T
Q  681 ttcaacttctagacactcaccaatcaaatg 710  Q
    ||||||  |||||||  || ||||||||||    
T  5431215 ttcaacggctagacatccaacaatcaaatg 5431244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 562 - 687
Target Start/End: Original strand, 5348094 - 5348219
Alignment:
Q  562 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcgaa 661  Q
    ||||| ||||||| ||| |||| || ||||||||||||||||||  | |  |||| ||||| |||| || || |||||| ||||||| |||||||| |||    
T  5348094 taggactgaaagtaaggatatccagaatattgttgaaaatgttatgcataggcttaacaaggcagatttatttattgctaataatccagtgggagttgaa 5348193  T
Q  662 tctcgagtgcaagatatgattcaact 687  Q
    ||| || |||| ||||||||||||||    
T  5348194 tctagattgcaggatatgattcaact 5348219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 560 - 681
Target Start/End: Complemental strand, 5692540 - 5692419
Alignment:
Q  560 aataggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcg 659  Q
    |||||||| |||||||||| ||| || ||||||||  |||| |||   |||||||| ||||||| |||||||||  ||||| || || | |||||||| |    
T  5692540 aataggaacgaaagtgaggctataaaagatattgtcaaaaaagttgtgcgtttgctagacaagaaagacttgtttgttgctaatcattcagtgggagttg 5692441  T
Q  660 aatctcgagtgcaagatatgat 681  Q
    || |||||||||||||||||||    
T  5692440 aacctcgagtgcaagatatgat 5692419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 5076954 - 5076905
Alignment:
Q  87 tggagagacgcacttcgtgatgctgctggccttgcaggatttgttgtcct 136  Q
    |||||||| | ||||||||| |||||||||||| |||||||||| |||||    
T  5076954 tggagagatgtacttcgtgaagctgctggcctttcaggatttgtggtcct 5076905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 562 - 595
Target Start/End: Complemental strand, 5262453 - 5262420
Alignment:
Q  562 taggaatgaaagtgaggttatcaaggatattgtt 595  Q
    ||||||||||||||||| ||||||||||||||||    
T  5262453 taggaatgaaagtgaggatatcaaggatattgtt 5262420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 562 - 684
Target Start/End: Complemental strand, 48015618 - 48015496
Alignment:
Q  562 taggaatgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcgaa 661  Q
    |||||||||||| |||||||| || ||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| ||||| | |||||  | |||    
T  48015618 taggaatgaaagcgaggttattaaagatattgttgaaaatattacacgattgcttgacaagacagacttgtttattgctaataattcagtggggattgaa 48015519  T
Q  662 tctcgagtgcaagatatgattca 684  Q
    ||| |||||| ||||||||||||    
T  48015518 tcttgagtgcgagatatgattca 48015496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 588 - 670
Target Start/End: Complemental strand, 10952 - 10870
Alignment:
Q  588 atattgttgaaaatgttacacgtttgcttgacaagacagacttgttcattgctgataatccggtgggagtcgaatctcgagtg 670  Q
    ||||||||||||| |||||   ||||||||||||||||||||| ||| ||| ||||||||||||||||||| |||||||||||    
T  10952 atattgttgaaaaagttactattttgcttgacaagacagacttattcgttgttgataatccggtgggagtcaaatctcgagtg 10870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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