View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6803_low_4 (Length: 374)

Name: NF6803_low_4
Description: NF6803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6803_low_4
NF6803_low_4
[»] chr7 (8 HSPs)
chr7 (1-374)||(20339029-20339403)
chr7 (12-201)||(20140584-20140769)
chr7 (2-209)||(20374260-20374467)
chr7 (12-203)||(20352211-20352402)
chr7 (28-132)||(20126015-20126119)
chr7 (6-189)||(20133093-20133277)
chr7 (16-116)||(6864660-6864760)
chr7 (226-266)||(22064025-22064065)
[»] chr4 (2 HSPs)
chr4 (14-85)||(11981558-11981629)
chr4 (135-209)||(11970730-11970804)
[»] chr1 (1 HSPs)
chr1 (11-47)||(15961343-15961379)


Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 20339029 - 20339403
Alignment:
Q  1 tggagtttcggttgttgccattgtgcctttcggagaagagtgatacacttttattgactaacagtcctgaaagccgagcaattctatacaactggagata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20339029 tggagtttcggttgttgccattgtgcctttcggagaagagtgatacacttttattgactaacagtcctgaaagccgagcaattctatacaactggagata 20339128  T
Q  101 taatagagccgaaagaatcaacaaaccttggtataatggcaaaaattatgttgaaagtttggtctggtttcgttgaaagtaagtttctcaataacaattt 200  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20339129 taatagagccgaaagaatcaacaaaccttggtttaatggcaaaaattatgtcgaaagtttggtctggtttcgttgaaagtaagtttctcaataacaattt 20339228  T
Q  201 actagtttgttcatcatgactttgatttgattgtattattgaatgattatttattggctattgttagaggattgacaatctggaattttattgaatctgt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20339229 actagtttgttcatcatgactttgatttgattgtattattgaatgattatttattggctattgttagaggattgacaatctggaa-tttattgaatctgt 20339327  T
Q  301 ttcgctcttttattcgt--taagttaaaagatgaagttcgtttaggtttttccctcaaaaagaaatccatcatatc 374  Q
    |||||||||||||||||  ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20339328 ttcgctcttttattcgttataagttacaagatgaagttcgtttaggttattccctcaaaaagaaatccatcatatc 20339403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 12 - 201
Target Start/End: Complemental strand, 20140769 - 20140584
Alignment:
Q  12 ttgttgccattgtgcctttcggagaagagtgatacacttttattgactaacagtcctgaaagccgagcaattctatacaactggagatataatagagccg 111  Q
    ||||| ||||| |||||||||||||||||||||||| |||||||||  |  | || ||||||    |||||||| || || |||||| ||||||||||||    
T  20140769 ttgttaccattatgcctttcggagaagagtgatacaattttattgataagtactcttgaaagtgaggcaattctttataattggagacataatagagccg 20140670  T
Q  112 aaagaatcaacaaaccttggtataatggcaaaaattatgttgaaagtttggtctggtttcgttgaaagtaagtttctcaataacaattta 201  Q
    |||||||| ||||||||||||  |||||||   |||||||||||||||||||   || || ||||||||||||||||| | |||||||||    
T  20140669 aaagaatctacaaaccttggttcaatggcatggattatgttgaaagtttggt---gtctc-ttgaaagtaagtttctctacaacaattta 20140584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 20374467 - 20374260
Alignment:
Q  2 ggagtttcggttgttgccattgtgcctttcggagaagagtgatacacttttattgactaacagtcctgaaagccgagcaattctatacaactggagatat 101  Q
    ||||||||  ||||| ||||| | ||| |||||||||| || |||||||||| |||| |||  || |||||| || |||||||| || ||||||||||||    
T  20374467 ggagtttcatttgtttccattattcctctcggagaagactggtacacttttactgacaaacgatcttgaaagtcgggcaattctctataactggagatat 20374368  T
Q  102 aatagagccgaaagaatcaacaaaccttggtataatggcaaaaattatgttgaaagtttggtctggtttcgttgaaagtaagtttctcaataacaattta 201  Q
    |||| ||  |||||| |||| ||||||||||  ||   ||  |||||||||||||||||||| | || || |||| |||||||||||| | |||||||||    
T  20374367 aatacagtagaaagagtcaataaaccttggttcaacaacatgaattatgttgaaagtttggtttcgtatcattgatagtaagtttctctacaacaattta 20374268  T
Q  202 ctagtttg 209  Q
    || |||||    
T  20374267 cttgtttg 20374260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 203
Target Start/End: Original strand, 20352211 - 20352402
Alignment:
Q  12 ttgttgccattgtgcctttcggagaagagtgatacacttttattgactaacagtcctgaaagccgagcaattctatacaactggagatataatagagccg 111  Q
    ||||| ||||| | ||| |||||||||| || ||||||||||||||| |||  || |||| | || |||||||| || || |||| |||||||||||  |    
T  20352211 ttgtttccatttttcctctcggagaagactggtacacttttattgacaaacgatcttgaaggtcgggcaattctctataattggatatataatagagtag 20352310  T
Q  112 aaagaatcaacaaaccttggtataatggcaaaaattatgttgaaagtttggtctggtttcgttgaaagtaagtttctcaataacaatttact 203  Q
    ||||| |||| ||| ||||||  ||   ||  |||||||||||||||||||| |  | |||||||||||||||||||| | |||||||||||    
T  20352311 aaagagtcaataaaacttggttcaaaaacatgaattatgttgaaagtttggtttcttatcgttgaaagtaagtttctctacaacaatttact 20352402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 28 - 132
Target Start/End: Complemental strand, 20126119 - 20126015
Alignment:
Q  28 tttcggagaagagtgatacacttttattgactaacagtcctgaaagccgagcaattctatacaactggagatataatagagccgaaagaatcaacaaacc 127  Q
    |||||||||||||||||||||| |||||||| |||| |  |||||||| | ||||||| ||||| |||||| |||||||||| ||||||||| || || |    
T  20126119 tttcggagaagagtgatacactattattgacaaacaatattgaaagcccatcaattctctacaattggagaaataatagagctgaaagaatccacgaaac 20126020  T
Q  128 ttggt 132  Q
    |||||    
T  20126019 ttggt 20126015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 20133277 - 20133093
Alignment:
Q  6 tttcggttgttgccattgtgcctttcggagaagagtgatacacttttattgactaacagtcctgaaagccgagcaattc-tatacaactggagatataat 104  Q
    |||||| |||| ||||| |||||||||||||||||||||||| |||||||||  |  | || |||||| |  ||||||| | || || ||||||||||||    
T  20133277 tttcgggtgttaccattatgcctttcggagaagagtgatacaattttattgataagtactcttgaaagtcaggcaattcttttataattggagatataat 20133178  T
Q  105 agagccgaaagaatcaacaaaccttggtataatggcaaaaattatgttgaaagtttggtctggtttcgttgaaagtaagtttctc 189  Q
    ||||  |  |||||  ||||||||  ||  |||||||  |||||||||||||||||||| |  | | ||||||||||||||||||    
T  20133177 agagtagcgagaattcacaaacctcagttcaatggcatgaattatgttgaaagtttggtttcatattgttgaaagtaagtttctc 20133093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 6864760 - 6864660
Alignment:
Q  16 tgccattgtgcctttcggagaagagtgatacacttttattgactaacagtcctgaaagccgagcaattctatacaactggagatataatagagccgaaag 115  Q
    ||||||| |||||||||||| ||||||||||||| |||||||  |||| ||  |||| || ||||||||| || || |||||| ||| |||||| |||||    
T  6864760 tgccattatgcctttcggaggagagtgatacactattattgagaaacaatcgcgaaaaccaagcaattctctataattggagagatagtagagcagaaag 6864661  T
Q  116 a 116  Q
    |    
T  6864660 a 6864660  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 266
Target Start/End: Original strand, 22064025 - 22064065
Alignment:
Q  226 tttgattgtattattgaatgattatttattggctattgtta 266  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  22064025 tttgattgtattattgaatgattatgtatcggctattgtta 22064065  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 11981629 - 11981558
Alignment:
Q  14 gttgccattgtgcctttcggagaagagtgatacacttttattgactaacagtcctgaaagccgagcaattct 85  Q
    ||||||||| ||  ||||||||||||||| ||||||  | ||||||||| ||| ||||| ||||||||||||    
T  11981629 gttgccattatgtgtttcggagaagagtggtacactactgttgactaactgtcatgaaaaccgagcaattct 11981558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 11970804 - 11970730
Alignment:
Q  135 aatggcaaaaattatgttgaaagtttggtctggtttcgttgaaagtaagtttctcaataacaatttactagtttg 209  Q
    ||||||||| | ||||||||||| ||||| | || | |||||||||||||||||| |  |||||||||| |||||    
T  11970804 aatggcaaagagtatgttgaaagcttggttttgtattgttgaaagtaagtttctctacgacaatttacttgtttg 11970730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 47
Target Start/End: Original strand, 15961343 - 15961379
Alignment:
Q  11 gttgttgccattgtgcctttcggagaagagtgataca 47  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  15961343 gttgatgccattatgcctttcggagaagagtgataca 15961379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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