View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6803_low_5 (Length: 371)
Name: NF6803_low_5
Description: NF6803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6803_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 22 - 364
Target Start/End: Complemental strand, 43369715 - 43369369
Alignment:
| Q |
22 |
aactgttgagtttgtgg-atctaacttatgataattaatggttaacccttctctcattcnnnnnnnnnn------gaaagaactcttccactcattctta |
114 |
Q |
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| T |
43369715 |
aactgttgagtttgtgggatctaacttatgataattaatggttaacccttctctcattcttttctttttttttttgaaagaactcttccactcattctta |
43369616 |
T |
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| Q |
115 |
gcttgcttcatgtcccccttcgtggttacatatcttcccannnnnnncatttcaacgtgacgataaaaatgaaaggatgtatcaagaacatgcactnnnn |
214 |
Q |
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| T |
43369615 |
gcttgcttgatgtcccccttcgtggttacatatcttcccatttttt-catttcaacgtgacgataaaaatgaaaggatgtatcaagaacatgcactaaaa |
43369517 |
T |
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| Q |
215 |
nnnnnnnnnnnntaacatgtacacattttttatatacaaaggatactcttcacaattttaaaaactaagttcttcaaagtagttggcannnnnnncaaac |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43369516 |
aaataaaaaaa-taacatgtacacattttttatatacaaaggatactcttcacaattttaaaaactaagttcttcaaagtagttggca-ttttttcaaac |
43369419 |
T |
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| Q |
315 |
tctaaatcaaataattaaagaacttaaagatctatctcttatgtcatatt |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43369418 |
tctaaatcaaataattaaagaacttaaagatctatctctcatgtcatatt |
43369369 |
T |
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