View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6803_low_6 (Length: 334)

Name: NF6803_low_6
Description: NF6803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6803_low_6
NF6803_low_6
[»] chr3 (23 HSPs)
chr3 (24-246)||(34897717-34897940)
chr3 (224-329)||(1995468-1995573)
chr3 (235-309)||(52859272-52859346)
chr3 (239-329)||(10474400-10474489)
chr3 (242-334)||(44637961-44638052)
chr3 (280-330)||(2230006-2230056)
chr3 (276-326)||(33632849-33632899)
chr3 (241-334)||(19830394-19830487)
chr3 (241-334)||(24754676-24754769)
chr3 (241-334)||(24763673-24763766)
chr3 (241-330)||(27033674-27033763)
chr3 (241-334)||(43719910-43720003)
chr3 (241-333)||(29586356-29586447)
chr3 (241-329)||(51982549-51982636)
chr3 (275-326)||(54911681-54911732)
chr3 (239-308)||(30235416-30235484)
chr3 (234-334)||(48084838-48084939)
chr3 (246-334)||(47750274-47750361)
chr3 (284-326)||(25285843-25285885)
chr3 (280-322)||(34373862-34373904)
chr3 (280-330)||(46167416-46167466)
chr3 (241-334)||(40851793-40851886)
chr3 (286-334)||(34373593-34373641)
[»] chr6 (16 HSPs)
chr6 (233-334)||(2800566-2800667)
chr6 (233-334)||(7215807-7215908)
chr6 (232-334)||(4804467-4804569)
chr6 (241-330)||(17828532-17828620)
chr6 (243-334)||(23936272-23936365)
chr6 (241-334)||(7162103-7162196)
chr6 (241-334)||(21159332-21159425)
chr6 (283-334)||(27826557-27826608)
chr6 (241-330)||(227526-227616)
chr6 (234-276)||(9952993-9953035)
chr6 (241-334)||(17944181-17944274)
chr6 (280-332)||(12412658-12412710)
chr6 (280-331)||(13089751-13089802)
chr6 (284-322)||(9954332-9954370)
chr6 (276-334)||(24484898-24484956)
chr6 (242-298)||(29229149-29229204)
[»] chr1 (20 HSPs)
chr1 (233-334)||(39426229-39426330)
chr1 (232-334)||(32887735-32887836)
chr1 (235-321)||(35534741-35534825)
chr1 (241-334)||(26372271-26372362)
chr1 (237-330)||(26860010-26860102)
chr1 (241-330)||(50294026-50294115)
chr1 (280-334)||(7840681-7840735)
chr1 (276-334)||(5047379-5047437)
chr1 (280-334)||(12151786-12151840)
chr1 (234-334)||(18976260-18976361)
chr1 (275-332)||(24977261-24977318)
chr1 (241-334)||(32618820-32618911)
chr1 (241-334)||(50484405-50484498)
chr1 (280-334)||(48327156-48327210)
chr1 (242-296)||(49384627-49384680)
chr1 (234-298)||(1228496-1228560)
chr1 (232-308)||(12380831-12380907)
chr1 (232-308)||(12384898-12384974)
chr1 (233-333)||(27982072-27982171)
chr1 (241-317)||(45978041-45978117)
[»] chr2 (22 HSPs)
chr2 (235-330)||(30709133-30709228)
chr2 (234-332)||(4446852-4446950)
chr2 (234-309)||(30217517-30217592)
chr2 (232-334)||(19908799-19908899)
chr2 (233-303)||(30721564-30721632)
chr2 (258-332)||(15709789-15709862)
chr2 (233-334)||(31618724-31618823)
chr2 (258-326)||(36929743-36929810)
chr2 (234-308)||(2063399-2063472)
chr2 (241-334)||(13238700-13238793)
chr2 (237-326)||(30857638-30857726)
chr2 (241-334)||(35316844-35316937)
chr2 (241-307)||(22061433-22061498)
chr2 (284-334)||(28564911-28564961)
chr2 (275-333)||(34512022-34512080)
chr2 (276-326)||(35315286-35315336)
chr2 (276-334)||(38397100-38397158)
chr2 (234-334)||(35315521-35315620)
chr2 (277-332)||(21454494-21454548)
chr2 (276-334)||(8988874-8988932)
chr2 (235-284)||(6946335-6946384)
chr2 (276-308)||(19905926-19905958)
[»] chr8 (15 HSPs)
chr8 (235-332)||(42761734-42761831)
chr8 (232-330)||(21360299-21360400)
chr8 (258-332)||(18689512-18689585)
chr8 (258-334)||(24557162-24557237)
chr8 (280-334)||(30426671-30426725)
chr8 (241-334)||(28069738-28069831)
chr8 (241-334)||(36991375-36991468)
chr8 (276-332)||(17520403-17520459)
chr8 (239-334)||(42338008-42338102)
chr8 (241-330)||(6014217-6014307)
chr8 (276-334)||(26749546-26749604)
chr8 (231-322)||(37966397-37966487)
chr8 (230-296)||(20169125-20169190)
chr8 (280-329)||(40695249-40695298)
chr8 (278-330)||(36748492-36748543)
[»] chr7 (25 HSPs)
chr7 (234-323)||(47270580-47270668)
chr7 (241-334)||(4888486-4888579)
chr7 (272-328)||(29844316-29844372)
chr7 (236-334)||(40023215-40023312)
chr7 (242-334)||(989148-989239)
chr7 (234-334)||(39855770-39855869)
chr7 (241-332)||(7712331-7712421)
chr7 (280-331)||(12139349-12139400)
chr7 (280-334)||(25084730-25084784)
chr7 (276-334)||(32915975-32916033)
chr7 (233-334)||(33450525-33450627)
chr7 (241-334)||(9559017-9559110)
chr7 (241-333)||(44647984-44648076)
chr7 (276-334)||(47799898-47799956)
chr7 (241-309)||(5463867-5463934)
chr7 (278-326)||(24193620-24193668)
chr7 (245-332)||(7362589-7362676)
chr7 (232-334)||(47500236-47500339)
chr7 (234-328)||(7373892-7373985)
chr7 (230-296)||(44390835-44390900)
chr7 (280-330)||(45260429-45260479)
chr7 (241-334)||(16366537-16366630)
chr7 (263-320)||(18064588-18064643)
chr7 (241-334)||(21151171-21151264)
chr7 (278-334)||(46802331-46802387)
[»] chr5 (23 HSPs)
chr5 (241-334)||(29341014-29341106)
chr5 (241-334)||(11775812-11775905)
chr5 (241-334)||(35660572-35660665)
chr5 (242-334)||(4895699-4895791)
chr5 (241-332)||(43309129-43309220)
chr5 (241-334)||(18625384-18625477)
chr5 (241-334)||(32129580-32129673)
chr5 (241-334)||(37266750-37266843)
chr5 (239-305)||(9460597-9460662)
chr5 (280-334)||(14349822-14349876)
chr5 (276-333)||(10362012-10362069)
chr5 (276-329)||(18653385-18653438)
chr5 (276-329)||(31653059-31653112)
chr5 (258-334)||(34827211-34827287)
chr5 (243-322)||(39902446-39902525)
chr5 (284-330)||(14688597-14688643)
chr5 (234-268)||(21213953-21213987)
chr5 (280-334)||(40753164-40753218)
chr5 (276-329)||(3057152-3057205)
chr5 (241-334)||(13032137-13032230)
chr5 (276-329)||(27428879-27428932)
chr5 (277-334)||(31279933-31279990)
chr5 (277-305)||(2984389-2984417)
[»] chr4 (26 HSPs)
chr4 (236-332)||(36532646-36532741)
chr4 (233-304)||(15178628-15178699)
chr4 (241-334)||(19901881-19901974)
chr4 (241-334)||(23610661-23610754)
chr4 (242-328)||(5815267-5815350)
chr4 (237-334)||(1871296-1871392)
chr4 (241-334)||(5416429-5416521)
chr4 (234-334)||(56453777-56453876)
chr4 (232-334)||(56558298-56558400)
chr4 (239-304)||(33841766-33841830)
chr4 (241-333)||(3952133-3952225)
chr4 (238-326)||(42844148-42844235)
chr4 (275-334)||(5763159-5763218)
chr4 (236-334)||(47922324-47922423)
chr4 (280-334)||(24073635-24073689)
chr4 (276-334)||(56269074-56269132)
chr4 (241-334)||(18207003-18207096)
chr4 (276-329)||(23474135-23474188)
chr4 (241-334)||(34778440-34778533)
chr4 (284-332)||(30567922-30567970)
chr4 (276-332)||(48914516-48914572)
chr4 (241-308)||(39862562-39862629)
chr4 (239-334)||(13493291-13493387)
chr4 (275-312)||(5817976-5818013)
chr4 (247-332)||(36003216-36003300)
chr4 (276-329)||(50483554-50483607)
[»] scaffold0062 (1 HSPs)
scaffold0062 (258-332)||(58701-58774)
[»] scaffold0012 (1 HSPs)
scaffold0012 (241-334)||(208082-208175)
[»] scaffold0250 (1 HSPs)
scaffold0250 (280-332)||(7168-7220)
[»] scaffold0035 (1 HSPs)
scaffold0035 (280-334)||(16399-16453)
[»] scaffold0121 (1 HSPs)
scaffold0121 (276-334)||(29567-29625)
[»] scaffold0008 (1 HSPs)
scaffold0008 (280-330)||(9203-9253)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 24 - 246
Target Start/End: Original strand, 34897717 - 34897940
Alignment:
Q  24 agatgatataaaaaccctctctccatttctcaaatgttgtagaaatggacaaatcagctgatnnnnnnnn-tagaagtggacatcttcaataccgttttg 122  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  34897717 agatgatataaaaaccctctctccatttcttaaatgttgtagaaatggacaaatcagctgataaaaaaaaatagaagtggacatcttcaataccgttttg 34897816  T
Q  123 ttcggtagaactataattttgatacaaatagaaaatatcattgtaaaaactgttttgtttttggagaatttgttggaatccaagtcaacatgtaatagag 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  34897817 ttcggtagaactataattttgatacaaatagaaaatatcattgtaaaaactgttttgtttttggagaatttgtcggaatccaagtcaacatgtaattgag 34897916  T
Q  223 gtgggtgagaggggttaggatcct 246  Q
    ||||||||||||||||||||||||    
T  34897917 gtgggtgagaggggttaggatcct 34897940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 224 - 329
Target Start/End: Complemental strand, 1995573 - 1995468
Alignment:
Q  224 tgggtgagaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccat 323  Q
    ||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||| | ||||||||||||| |||||||||     
T  1995573 tgggtgacatgggttaggatcctcttcattttatcaaataaatggaagtacacaatttgaagagagatagacatagaaaatagataatgagtcctaccaa 1995474  T
Q  324 taagtg 329  Q
    ||||||    
T  1995473 taagtg 1995468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 52859346 - 52859272
Alignment:
Q  235 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 309  Q
    ||||| |||||||| |||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||    
T  52859346 ggttatgatcctctccatttgataaaataaatgaaaatacacaatttagagagagatagacacataaaatagata 52859272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 329
Target Start/End: Original strand, 10474400 - 10474489
Alignment:
Q  239 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtg 329  Q
    ||||||||||  |||||| | |||||||||| |||  |||||| |||||| |||||||||||||||||||||||| |||||| ||||||||    
T  10474400 aggatcctctctatttgacataataaatgga-gtatgcaattttgagagatatagacacataaaatagataatggatcctactattaagtg 10474489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 334
Target Start/End: Complemental strand, 44638052 - 44637961
Alignment:
Q  242 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||| |||||||| |||||||||||| |||  |||||| |||||||||| |||||||||||||||| |||  ||||| ||||||| |||||    
T  44638052 atcctcatcatttgacaaaataaatgga-gtatgcaattttgagagagataaacacataaaatagatagtggaccctactattaagtaggtcc 44637961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 2230056 - 2230006
Alignment:
Q  280 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgg 330  Q
    ||||||||||||||||||| ||||||||| ||||||||||||| |||||||    
T  2230056 ttggagagagatagacacaaaaaatagatgatgggtcctaccactaagtgg 2230006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 276 - 326
Target Start/End: Complemental strand, 33632899 - 33632849
Alignment:
Q  276 caatttggagagagatagacacataaaatagataatgggtcctaccattaa 326  Q
    |||||||||||||||||||||||||||||||||| ||| |||||| |||||    
T  33632899 caatttggagagagatagacacataaaatagatagtggatcctactattaa 33632849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 19830394 - 19830487
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||  ||||||||||||  |   ||| |||| |||| ||||||||| |||||||||  ||||||||||||||||||||||||    
T  19830394 gatcctctccatttggcaaaataaatggagttttgcaagttggggagaaatagacacaaaaaatagatggtgggtcctaccattaagtgggtcc 19830487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 24754769 - 24754676
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||  ||||||||||||  |  |||| ||||||||||||||||||| |||||||||  |  ||||||||| |||||||||||    
T  24754769 gatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagatggtatgtcctaccactaagtgggtcc 24754676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 24763766 - 24763673
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||  ||||||||||||  |  |||| ||||||||||||||||||| |||||||||  |  ||||||||| |||||||||||    
T  24763766 gatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacacaaaatagatggtatgtcctaccactaagtgggtcc 24763673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 330
Target Start/End: Complemental strand, 27033763 - 27033674
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgg 330  Q
    |||| ||| ||||||||||||||||||||  |   ||| |||||||||||||||||||  ||||||||  |||||||||||| |||||||    
T  27033763 gatcatctccatttgataaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggtcctaccactaagtgg 27033674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 43719910 - 43720003
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||| | ||||||||||||  |   ||| ||||||||||||||||||| |||||| ||  |||||||||||| |||||||||||    
T  43719910 gatcctctccatttaacaaaataaatggagttttgcaagttggagagagatagacacaaaaaataaattgtgggtcctaccactaagtgggtcc 43720003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 333
Target Start/End: Complemental strand, 29586447 - 29586356
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtc 333  Q
    ||||||||||||||   | |||||||||| |||  || ||||||||||||||||||||||||||||||| |  ||| ||| ||||||||||||    
T  29586447 gatcctcttcatttagcataataaatgga-gtatgcagtttggagagagatagacacataaaatagatagtaagtcttactattaagtgggtc 29586356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 329
Target Start/End: Original strand, 51982549 - 51982636
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtg 329  Q
    |||||||| |||||   |||||||||||||| |  ||||||||||||||||||| ||||||||||| || ||||| ||| |||||||||    
T  51982549 gatcctctccatttataaaaataaatggaag-atgcaatttggagagagatagatacataaaatagttagtgggttctatcattaagtg 51982636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 326
Target Start/End: Complemental strand, 54911732 - 54911681
Alignment:
Q  275 acaatttggagagagatagacacataaaatagataatgggtcctaccattaa 326  Q
    |||||||| ||||||||||| ||||||||||| || ||||||||||||||||    
T  54911732 acaatttgaagagagatagagacataaaataggtagtgggtcctaccattaa 54911681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 30235416 - 30235484
Alignment:
Q  239 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 308  Q
    |||||| |||||||||| |||||||||||| ||||  ||||||| ||||||||||||| | |||||||||    
T  30235416 aggatcatcttcatttgttaaaataaatgg-agtatgcaatttgaagagagatagacataaaaaatagat 30235484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 334
Target Start/End: Complemental strand, 48084939 - 48084838
Alignment:
Q  234 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgggt 332  Q
    |||||| |||||||| |||||| |||||||||| ||  |   |||||||| |||||||||||||| || |||||||  ||||||| |||| |||||||||    
T  48084939 gggttaagatcctctccatttgctaaaataaattgagttttgcaatttggggagagatagacacaaaagaatagatggtgggtccaaccactaagtgggt 48084840  T
Q  333 cc 334  Q
    ||    
T  48084839 cc 48084838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 334
Target Start/End: Original strand, 47750274 - 47750361
Alignment:
Q  246 tcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||||| |||||||||| | ||| |||||||| ||||| ||| ||||| ||||||||||| | ||| || ||||||||| ||||    
T  47750274 tcttcatttgacaaaataaatg-aggtatacaatttgaagagacataaacacaaaaaatagataaagagtcttatcattaagtgagtcc 47750361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 326
Target Start/End: Original strand, 25285843 - 25285885
Alignment:
Q  284 agagagatagacacataaaatagataatgggtcctaccattaa 326  Q
    |||||||||||||||||||||||||| ||| ||||| ||||||    
T  25285843 agagagatagacacataaaatagatagtggatcctatcattaa 25285885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 322
Target Start/End: Complemental strand, 34373904 - 34373862
Alignment:
Q  280 ttggagagagatagacacataaaatagataatgggtcctacca 322  Q
    ||||||||||||||||||| |||||||||  ||||||||||||    
T  34373904 ttggagagagatagacacaaaaaatagatggtgggtcctacca 34373862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 46167466 - 46167416
Alignment:
Q  280 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgg 330  Q
    ||||||||||||||||||| |||||| ||  |||||||||||| |||||||    
T  46167466 ttggagagagatagacacaaaaaatatatggtgggtcctaccactaagtgg 46167416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 40851886 - 40851793
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||  |||||| ||||||||||||  |   ||| ||||||| ||||||||||| |||||||||  ||||| | |||| |||||||||||    
T  40851886 gatcctctcaatttgacaaaataaatggagttttgcaagttggagaaagatagacacaaaaaatagatggtgggttcaaccactaagtgggtcc 40851793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 34373593 - 34373641
Alignment:
Q  286 agagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||||||  |||||||||  |||||||||||| |||||||||||    
T  34373593 agagatagacactaaaaatagatggtgggtcctaccactaagtgggtcc 34373641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 3e-36; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 233 - 334
Target Start/End: Original strand, 2800566 - 2800667
Alignment:
Q  233 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    |||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||    
T  2800566 ggggttaggatcctctccatttgataaaattaatggaaatacacaatttggagagagatagacacataaaatagatagtggatcataccattaagtgggt 2800665  T
Q  333 cc 334  Q
    ||    
T  2800666 cc 2800667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 233 - 334
Target Start/End: Original strand, 7215807 - 7215908
Alignment:
Q  233 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    |||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||    
T  7215807 ggggttagtatcctctccatttgataaaataaatggaagtgcacaatttggagagagatagacacataaaatagatagtgggtcctaccactaattgggt 7215906  T
Q  333 cc 334  Q
    ||    
T  7215907 cc 7215908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 232 - 334
Target Start/End: Complemental strand, 4804569 - 4804467
Alignment:
Q  232 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtggg 331  Q
    |||||| | |||||||| ||||||  ||||||||||||  |  |||| ||||||||||||||||||| |||||||||  |||||||||||| ||||||||    
T  4804569 aggggtgaagatcctctccatttggcaaaataaatggagttttacaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtggg 4804470  T
Q  332 tcc 334  Q
    |||    
T  4804469 tcc 4804467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 17828532 - 17828620
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgg 330  Q
    |||||||| |||||| || ||||| |||| |||  |||||||||||||||||||||||||||||||||| ||| | |||| |||||||||    
T  17828532 gatcctctacatttggtataataattgga-gtatgcaatttggagagagatagacacataaaatagatagtggattctactattaagtgg 17828620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 334
Target Start/End: Complemental strand, 23936365 - 23936272
Alignment:
Q  243 tcctcttcatttgataaaataaatggaagtacacaatttggagagaga--tagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||| ||||||||||| | |||| |||||||||||| |||||||||  ||||||||||| || ||||  || | ||||||||||||||||||    
T  23936365 tcctctccatttgataaattgaatgaaagtacacaattcggagagagagatagacacataagatggatagcggattctaccattaagtgggtcc 23936272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 7162196 - 7162103
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||| ||| ||||||||||||||||||||  |   ||| |||||||||||||||||||  ||||||||  |||||||||| | |||||||||||    
T  7162196 gatcatctccatttgataaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgggtcctactactaagtgggtcc 7162103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 21159332 - 21159425
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| |||||| ||||||||||| |  |   ||| ||||||||| ||||||||| |||||||||  |||||||||||| |||||||||||    
T  21159332 gatcctctccatttgttaaaataaatgaagttttgcaagttggagagaaatagacacaaaaaatagatggtgggtcctaccactaagtgggtcc 21159425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 283 - 334
Target Start/End: Complemental strand, 27826608 - 27826557
Alignment:
Q  283 gagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||||||||||| |||||||||  |||||||||||| |||||||||||    
T  27826608 gagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcc 27826557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 227526 - 227616
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgg 330  Q
    |||||||| |||||| |||||||||||||  |   || |||||||||||||||||||| || |||||||  |||||||||||| |||||||    
T  227526 gatcctctccatttgctaaaataaatggagttttgcattttggagagagatagacacaaaagaatagatggtgggtcctaccactaagtgg 227616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 9952993 - 9953035
Alignment:
Q  234 gggttaggatcctcttcatttgataaaataaatggaagtacac 276  Q
    |||||| |||||||| |||||||||||||||||||||||||||    
T  9952993 gggttaagatcctctccatttgataaaataaatggaagtacac 9953035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 17944274 - 17944181
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||||||||||  ||||||||||||  |    || ||||||||||||||||||| |||||||||  | |||||||||| ||| |||||||    
T  17944274 gatcctcttcatttggcaaaataaatggagttttgtaagttggagagagatagacacaaaaaatagatggtaggtcctaccactaaatgggtcc 17944181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 12412710 - 12412658
Alignment:
Q  280 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    |||||||||||||||||||  ||||||||  |||||||||||| |||||||||    
T  12412710 ttggagagagatagacacaagaaatagatggtgggtcctaccactaagtgggt 12412658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 280 - 331
Target Start/End: Original strand, 13089751 - 13089802
Alignment:
Q  280 ttggagagagatagacacataaaatagataatgggtcctaccattaagtggg 331  Q
    ||||||||||||||||||| || ||||||  |||||||||||| ||||||||    
T  13089751 ttggagagagatagacacaaaatatagatggtgggtcctaccactaagtggg 13089802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 322
Target Start/End: Original strand, 9954332 - 9954370
Alignment:
Q  284 agagagatagacacataaaatagataatgggtcctacca 322  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  9954332 agagagatagacacataaaatagatagtgggtcccacca 9954370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 24484956 - 24484898
Alignment:
Q  276 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||||||||||||||||| ||||||  |  ||||||||| || |||||||||||    
T  24484956 caatttggagagagatagacacaaaaaataagtggtgggtcctatcactaagtgggtcc 24484898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 298
Target Start/End: Complemental strand, 29229204 - 29229149
Alignment:
Q  242 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacaca 298  Q
    ||||||| |||||| || |||||||||| |||  |||||||||||||||||||||||    
T  29229204 atcctctccatttggtataataaatgga-gtatgcaatttggagagagatagacaca 29229149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 233 - 334
Target Start/End: Complemental strand, 39426330 - 39426229
Alignment:
Q  233 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    |||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||    
T  39426330 ggggttagtatcatctccatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagatagtgggtcctaccactaattgggt 39426231  T
Q  333 cc 334  Q
    ||    
T  39426230 cc 39426229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 232 - 334
Target Start/End: Original strand, 32887735 - 32887836
Alignment:
Q  232 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtggg 331  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||| ||| |||| |||||||||||||||||| ||| ||| |||||||||||| ||||    
T  32887735 agggattaggatcctcttcatttgataaaataaatgga-gtacacagtttagagaaagatagacacataaaataaatagtggatcctaccattaaatggg 32887833  T
Q  332 tcc 334  Q
    |||    
T  32887834 tcc 32887836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 235 - 321
Target Start/End: Original strand, 35534741 - 35534825
Alignment:
Q  235 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctacc 321  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||| |||||||    
T  35534741 ggttagtatcctctccatttgataaaataaatggaagtacacaattt--agagagatagacacataaaatagatagtggatcctacc 35534825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 26372362 - 26372271
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||  ||||||||||||||||||||||| | |||||  |||||||||||||| ||||||||| ||| | ||||||||||||||||||||    
T  26372362 gatcctctcaatttgataaaataaatggaagtagataattt--agagagatagacacgtaaaatagacaatagatcctaccattaagtgggtcc 26372271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 237 - 330
Target Start/End: Original strand, 26860010 - 26860102
Alignment:
Q  237 ttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgg 330  Q
    |||||||| |||  ||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||| | ||||||| || |||||||    
T  26860010 ttaggatcatctctatttgataaaataaatgga-gtacataatttgaagagagatagacacataaaatagatagtaggtcctatcactaagtgg 26860102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 241 - 330
Target Start/End: Original strand, 50294026 - 50294115
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgg 330  Q
    |||||||||||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||||||||| |||||||    
T  50294026 gatcctcttcatttggcaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgg 50294115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 7840681 - 7840735
Alignment:
Q  280 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||||||||||||||  |||||||| |||||||||||||||||| ||||||    
T  7840681 ttggagagagatagacacaagaaatagatgatgggtcctaccattaagcgggtcc 7840735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 5047379 - 5047437
Alignment:
Q  276 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||||||||||| ||  ||||||||||||||||| |||||||| || ||||||||    
T  5047379 caatttggagagagattgatgcataaaatagataatggatcctaccactatgtgggtcc 5047437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 12151840 - 12151786
Alignment:
Q  280 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||||| ||||||| |||||||||  |||||||||||| |||||||||||    
T  12151840 ttggagagagaaagacacaaaaaatagattgtgggtcctaccactaagtgggtcc 12151786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 334
Target Start/End: Original strand, 18976260 - 18976361
Alignment:
Q  234 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgggt 332  Q
    |||||| |||||||| |||||| |||||||||| ||  |   ||||||||||||||||||||||| || |||||||  ||| ||| |||||||||| |||    
T  18976260 gggttaagatcctctccatttgctaaaataaattgagttttgcaatttggagagagatagacacaaaagaatagatggtggatccaaccattaagtaggt 18976359  T
Q  333 cc 334  Q
    ||    
T  18976360 cc 18976361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 24977318 - 24977261
Alignment:
Q  275 acaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    ||||||| |||||||||||||||| |||||||||  ||| |||||||| |||||||||    
T  24977318 acaatttagagagagatagacacaaaaaatagatggtggatcctaccactaagtgggt 24977261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 32618911 - 32618820
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||||||||||  | |||||||||| |||  |||||||||||||||| |||| || ||||||||| ||| |||||| ||||||| |||||    
T  32618911 gatcctcttcatttggcataataaatgga-gtatccaatttggagagagatggacatat-aaatagatagtggatcctactattaagtaggtcc 32618820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 50484498 - 50484405
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  ||||| | |||| |||||||||||    
T  50484498 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtacaaccactaagtgggtcc 50484405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 48327156 - 48327210
Alignment:
Q  280 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||||||||||| | |||||||||  || ||||||||| |||||||||||    
T  48327156 ttggagagagatagacaaaaaaaatagatggtgagtcctaccactaagtgggtcc 48327210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 296
Target Start/End: Original strand, 49384627 - 49384680
Alignment:
Q  242 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagaca 296  Q
    ||||||| |||||| |||||||||||||| || ||||||| ||||||||||||||    
T  49384627 atcctctccatttgttaaaataaatggaa-tatacaatttagagagagatagaca 49384680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 298
Target Start/End: Original strand, 1228496 - 1228560
Alignment:
Q  234 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacaca 298  Q
    |||||| ||||||||||||||  |||||||||||||  |   ||||||||||||||| |||||||    
T  1228496 gggttaagatcctcttcatttactaaaataaatggagttttgcaatttggagagagacagacaca 1228560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 308
Target Start/End: Original strand, 12380831 - 12380907
Alignment:
Q  232 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 308  Q
    |||||| | |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  12380831 aggggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 12380907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 308
Target Start/End: Original strand, 12384898 - 12384974
Alignment:
Q  232 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 308  Q
    |||||| | |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||    
T  12384898 aggggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagat 12384974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 333
Target Start/End: Complemental strand, 27982171 - 27982072
Alignment:
Q  233 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    ||||||| |||||||| |||||   |||||||||||||| |  ||||||||||||| ||||||| | |||||| ||  ||||||| | |||||| |||||    
T  27982171 ggggttaagatcctctccatttataaaaataaatggaag-atgcaatttggagagatatagacataaaaaatatatgttgggtcccatcattaaatgggt 27982073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 45978117 - 45978041
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcc 317  Q
    ||||||||  |||||||||||||||||||  |   ||| ||||||||||||||| ||| |||||||||  |||||||    
T  45978117 gatcctctctatttgataaaataaatggagttttgcaagttggagagagatagatacaaaaaatagatggtgggtcc 45978041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 235 - 330
Target Start/End: Complemental strand, 30709228 - 30709133
Alignment:
Q  235 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgg 330  Q
    |||||||||||||| ||| | ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  30709228 ggttaggatcctctccatcttataaaatcaatgaaagtacacaatttggagagagatagacacataaaatagatattgggtcctaccactaagtgg 30709133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 234 - 332
Target Start/End: Original strand, 4446852 - 4446950
Alignment:
Q  234 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    ||||||| ||||||| |||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||| ||| |||||||| ||| |||||    
T  4446852 gggttagtatcctctccatttgataaaataaatggaagtgtacaatttgaagagagatagacacataaaatagatagtggatcctaccactaattgggt 4446950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 234 - 309
Target Start/End: Complemental strand, 30217592 - 30217517
Alignment:
Q  234 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 309  Q
    |||||||||||||||  ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||    
T  30217592 gggttaggatcctctctatttgataaaataaatggaagcacacaatttagagtgagatagacacataaaatagata 30217517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 232 - 334
Target Start/End: Complemental strand, 19908899 - 19908799
Alignment:
Q  232 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtggg 331  Q
    |||||| | |||||||||||||||||| |||||||||| |||  |||||||||| ||||||||||||||||||||||| || |||||||  |||||||||    
T  19908899 aggggtaaagatcctcttcatttgatataataaatgga-gtatgcaatttggag-gagatagacacataaaatagatagtgagtcctacttttaagtggg 19908802  T
Q  332 tcc 334  Q
    |||    
T  19908801 tcc 19908799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 30721564 - 30721632
Alignment:
Q  233 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaa 303  Q
    ||||||| ||||| || ||||||||||||||||| |||||||||||||||  |||||||||||||||||||    
T  30721564 ggggttaagatccgctccatttgataaaataaatagaagtacacaatttg--gagagatagacacataaaa 30721632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 15709862 - 15709789
Alignment:
Q  258 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    ||||||||||||| ||  ||||||||||||||||| ||| |||||||||||| ||| ||||||||||||||||||    
T  15709862 aaaataaatggaa-tatgcaatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggt 15709789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 233 - 334
Target Start/End: Original strand, 31618724 - 31618823
Alignment:
Q  233 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    |||||||||||||||| |||||||||||  ||||||| ||| |||||||||||| ||||||| | |||||||||||| || ||| || ||||||||| ||    
T  31618724 ggggttaggatcctctccatttgataaag-aaatgga-gtatacaatttggagaaagatagatatataaaatagatagtgagtcatatcattaagtgagt 31618821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 326
Target Start/End: Complemental strand, 36929810 - 36929743
Alignment:
Q  258 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaa 326  Q
    |||||||||||| |||  ||||||||||||||||||||||||||||||| || || |||||||||||||    
T  36929810 aaaataaatgga-gtatgcaatttggagagagatagacacataaaataggtagtgtgtcctaccattaa 36929743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 2063472 - 2063399
Alignment:
Q  234 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 308  Q
    |||||| |||||||||||||||| ||||||||| || ||   ||||||||||||||||||||||| |||||||||    
T  2063472 gggttaagatcctcttcatttgacaaaataaataga-gtttgcaatttggagagagatagacacaaaaaatagat 2063399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 13238793 - 13238700
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  ||||||||||||  ||||||||||    
T  13238793 gatcctctccatttggcaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccaccaagtgggtcc 13238700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 326
Target Start/End: Original strand, 30857638 - 30857726
Alignment:
Q  237 ttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaa 326  Q
    |||||||||||| ||||| | |||||||||||| |||   |||||| |||||| |||||||| |||||||||||||| |||||| |||||    
T  30857638 ttaggatcctctccatttcacaaaataaatgga-gtatgtaatttgaagagaggtagacacaaaaaatagataatggatcctactattaa 30857726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 35316937 - 35316844
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  ||| |||||||| |||||||||||    
T  35316937 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtcc 35316844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 22061433 - 22061498
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaataga 307  Q
    ||||||||  |||||| |||||||||| |||||  ||||||| ||||||||||||||||||||||||    
T  22061433 gatcctctcaatttgacaaaataaatg-aagtatgcaatttgaagagagatagacacataaaataga 22061498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 284 - 334
Target Start/End: Complemental strand, 28564961 - 28564911
Alignment:
Q  284 agagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||||||||| |||||||||  |||||||||||| |||||||||||    
T  28564961 agagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcc 28564911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 333
Target Start/End: Original strand, 34512022 - 34512080
Alignment:
Q  275 acaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtc 333  Q
    |||||||||||| |||||||||||||||||||||| |||||  ||| ||||||| ||||    
T  34512022 acaatttggagaaagatagacacataaaatagatagtgggttatactattaagtaggtc 34512080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 326
Target Start/End: Original strand, 35315286 - 35315336
Alignment:
Q  276 caatttggagagagatagacacataaaatagataatgggtcctaccattaa 326  Q
    ||||||| |||||||||||||||||||||||||||||| || ||| |||||    
T  35315286 caatttgaagagagatagacacataaaatagataatggatcttactattaa 35315336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 38397158 - 38397100
Alignment:
Q  276 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||| ||||||||||||| |||||||||||| ||||| |||| |||||||| ||||    
T  38397158 caatttgaagagagatagacaaataaaatagatagtgggtgctactattaagtgagtcc 38397100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 334
Target Start/End: Complemental strand, 35315620 - 35315521
Alignment:
Q  234 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtc 333  Q
    |||||| |||||||| |||||   |||||||||||||| |  ||||||||||||||||| ||||| | ||||| |  ||||||||| ||||||||| |||    
T  35315620 gggttaagatcctctccatttataaaaataaatggaag-atgcaatttggagagagataaacacaaacaataggtggtgggtcctatcattaagtgagtc 35315522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 332
Target Start/End: Original strand, 21454494 - 21454548
Alignment:
Q  277 aatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    ||||| |||||||||||||||| |||||||||  |||||| |||||||||||||||    
T  21454494 aatttagagagagatagacaca-aaaatagattgtgggtcataccattaagtgggt 21454548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 8988932 - 8988874
Alignment:
Q  276 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||||||||||||||||| ||||||  | || ||||||| || |||||||||||    
T  8988932 caatttggagagagatagacacaaaaaataagtgataggtcctatcactaagtgggtcc 8988874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 6946384 - 6946335
Alignment:
Q  235 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttgga 284  Q
    |||||||||||||  |||||||||||||||||| || | |||||||||||    
T  6946384 ggttaggatcctccccatttgataaaataaatgaaaatgcacaatttgga 6946335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 308
Target Start/End: Complemental strand, 19905958 - 19905926
Alignment:
Q  276 caatttggagagagatagacacataaaatagat 308  Q
    |||||| ||||||||||||||||||||||||||    
T  19905958 caattttgagagagatagacacataaaatagat 19905926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 235 - 332
Target Start/End: Complemental strand, 42761831 - 42761734
Alignment:
Q  235 ggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    ||||||||||||||||| || ||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||| |||||||| | |||||||    
T  42761831 ggttaggatcctcttcacttaataaaataaatggaagtacgcaatttgaagagagatagacacataaaatagatagtggatcctaccactcagtgggt 42761734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 21360400 - 21360299
Alignment:
Q  232 aggggttaggatcctcttcatttgataaaataaatggaag----tacacaatttggagagagatagacacataaaatagataatgggtcctaccattaag 327  Q
    ||||||||||||||||| ||||||||||||||||| ||||    |||| |||||||||||||||| |||||||| ||||||||| | || ||||||||||    
T  21360400 aggggttaggatcctctccatttgataaaataaat-gaagtacatacataatttggagagagataaacacataatatagataatagatcataccattaag 21360302  T
Q  328 tgg 330  Q
    |||    
T  21360301 tgg 21360299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 18689585 - 18689512
Alignment:
Q  258 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    ||||||||||||| ||  ||||||||||||||||| ||| |||||||||||| ||| ||||||||||||||||||    
T  18689585 aaaataaatggaa-tatgcaatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggt 18689512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 334
Target Start/End: Original strand, 24557162 - 24557237
Alignment:
Q  258 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||||||||| |  ||||||||| ||||||| | ||||||||||| |||||||||||||||||||||| ||||    
T  24557162 aaaataaatggaag-atgcaatttggaaagagatatagacataaaataggtaatgggtcctaccattaagtgagtcc 24557237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 30426671 - 30426725
Alignment:
Q  280 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||||||||||||| |||||||||  |||||||||||| |||||||||||    
T  30426671 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcc 30426725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 28069831 - 28069738
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||| ||||||| |||||||||  |||||||||||| |||||||||||    
T  28069831 gatcctctccatttggcaaaataaatggagatttgcaagttggagagagaaagacacaaaaaatagatggtgggtcctaccactaagtgggtcc 28069738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 36991468 - 36991375
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||| |  |||||||| ||||||||||||| |||||||||||    
T  36991468 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacataagaaatagatgatgggtcctaccactaagtgggtcc 36991375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 276 - 332
Target Start/End: Complemental strand, 17520459 - 17520403
Alignment:
Q  276 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    ||||||||||||| ||||||||||||||||||||  | ||||||| |||||||||||    
T  17520459 caatttggagagatatagacacataaaatagatagcgagtcctactattaagtgggt 17520403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 239 - 334
Target Start/End: Original strand, 42338008 - 42338102
Alignment:
Q  239 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||||||||||||||||||||||  ||||| | |||||||||||| ||| |||  ||||||||||| ||| |  ||| |||||||| ||||    
T  42338008 aggatcctcttcatttgataaaataaat-taagtatataatttggagagatatatacatgtaaaatagatagtggattgtactattaagtgtgtcc 42338102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 330
Target Start/End: Complemental strand, 6014307 - 6014217
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgg 330  Q
    |||||||| |||||| |||||||||| ||  |   ||||||||||| ||||||||||| || ||||||| || ||||||||||||||||||    
T  6014307 gatcctctccatttgctaaaataaatagagttttgcaatttggagaaagatagacacaaaagaatagatgataggtcctaccattaagtgg 6014217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 26749546 - 26749604
Alignment:
Q  276 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||||||||||||||||| ||||||  | |||||||||| || |||||||||||    
T  26749546 caatttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcc 26749604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 322
Target Start/End: Original strand, 37966397 - 37966487
Alignment:
Q  231 gaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctacca 322  Q
    ||||||||| |||||||| ||||||  ||||||||||||| |   ||||||| ||||||||| ||||| |||||||||  | ||||||||||    
T  37966397 gaggggttaagatcctctccatttggcaaaataaatggaa-tttgcaatttgaagagagataaacacaaaaaatagattgtaggtcctacca 37966487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 20169190 - 20169125
Alignment:
Q  230 agaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagaca 296  Q
    |||||||||| |||||||| |||||   |||||||||||||| |  |||||||||||||||||||||    
T  20169190 agaggggttaagatcctctccatttataaaaataaatggaag-atgcaatttggagagagatagaca 20169125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 40695249 - 40695298
Alignment:
Q  280 ttggagagagatagacacataaaatagataatgggtcctaccattaagtg 329  Q
    ||||||||||||||||||| |||||||||  | |||||||||| ||||||    
T  40695249 ttggagagagatagacacaaaaaatagatggtaggtcctaccactaagtg 40695298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 330
Target Start/End: Original strand, 36748492 - 36748543
Alignment:
Q  278 atttggagagagatagacacataaaatagataatgggtcctaccattaagtgg 330  Q
    ||||||||| ||||||||||| |||||||| |  |||||||||||||||||||    
T  36748492 atttggagatagatagacaca-aaaatagacagcgggtcctaccattaagtgg 36748543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 234 - 323
Target Start/End: Complemental strand, 47270668 - 47270580
Alignment:
Q  234 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccat 323  Q
    |||||||||||||||  |||||||||||||||||||| |||||||||| |||| |||||||||||| ||||||||||| || ||||||||    
T  47270668 gggttaggatcctctctatttgataaaataaatggaattacacaatttagagatagatagacacat-aaatagataataggccctaccat 47270580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 4888579 - 4888486
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||| ||||||||||||  |   ||| ||||||||||||||||||| |||||||||| |||||||||||| ||||| |||||    
T  4888579 gatcctctccatttgacaaaataaatggagatttgcaagttggagagagatagacacaaaaaatagatagtgggtcctaccactaagtaggtcc 4888486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 272 - 328
Target Start/End: Complemental strand, 29844372 - 29844316
Alignment:
Q  272 tacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagt 328  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||    
T  29844372 tacacaatttggagagagatagacacataaaatagatagtgggttctaccactaagt 29844316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 236 - 334
Target Start/End: Original strand, 40023215 - 40023312
Alignment:
Q  236 gttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||| |||||||  |||||| ||||||||  || ||| |||||||||||| ||||||||| ||||||||| |||||| || |||||||||||||||||    
T  40023215 gttagaatcctctctatttgaaaaaataaaacga-gtatacaatttggagaaagatagacatataaaatagttaatggatcttaccattaagtgggtcc 40023312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 334
Target Start/End: Complemental strand, 989239 - 989148
Alignment:
Q  242 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||| ||||||| ||| |||||||| ||   ||||||||||||||||||||||| |||||| ||| |||||||||||| ||||| |||||    
T  989239 atcctctccatttgacaaattaaatgga-gtttgcaatttggagagagatagacacaaaaaatatatagtgggtcctaccactaagtaggtcc 989148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 334
Target Start/End: Original strand, 39855770 - 39855869
Alignment:
Q  234 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtc 333  Q
    |||||| ||| |||||||||||| ||| |||||||| ||    ||||||||||||||||||||||||||| ||||  | |||||||||| ||||||||||    
T  39855770 gggttaagattctcttcatttgacaaattaaatgga-gtttgtaatttggagagagatagacacataaaaaagatggtcggtcctaccactaagtgggtc 39855868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 332
Target Start/End: Original strand, 7712331 - 7712421
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    |||||||| |||||   |||||||||||||| |  |||||| |||||||||||| |||||| ||||||| || |||||||||||||||||||    
T  7712331 gatcctctccatttataaaaataaatggaag-atgcaatttagagagagatagagacataagatagatagtgagtcctaccattaagtgggt 7712421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 280 - 331
Target Start/End: Complemental strand, 12139400 - 12139349
Alignment:
Q  280 ttggagagagatagacacataaaatagataatgggtcctaccattaagtggg 331  Q
    ||||||||||||||||||| |||||||||  |||||||||||||||||||||    
T  12139400 ttggagagagatagacacaaaaaatagatggtgggtcctaccattaagtggg 12139349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 25084730 - 25084784
Alignment:
Q  280 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||||||||||||| |||||||||  |||||||||||| |||||||||||    
T  25084730 ttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcc 25084784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 276 - 334
Target Start/End: Complemental strand, 32916033 - 32915975
Alignment:
Q  276 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||| ||||||||||||||| |||||| ||| ||||||||||||||||||| ||||    
T  32916033 caatttgaagagagatagacacaaaaaataaatagtgggtcctaccattaagtgagtcc 32915975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 233 - 334
Target Start/End: Complemental strand, 33450627 - 33450525
Alignment:
Q  233 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtggg 331  Q
    ||||||| |||||||| |||||| |||||||||| ||  |   ||||||||||||||||||||||| || |||||||  ||||||| |||| ||||||||    
T  33450627 ggggttaagatcctctccatttgctaaaataaattgagttttgcaatttggagagagatagacacaaaagaatagatggtgggtccaaccactaagtggg 33450528  T
Q  332 tcc 334  Q
    |||    
T  33450527 tcc 33450525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 9559017 - 9559110
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||| ||| |||||||||  |||||||||||| |||||||||||    
T  9559017 gatcctctccatttggcaaaataaatggagatttgcaagttggagagagatagatacaaaaaatagatggtgggtcctaccactaagtgggtcc 9559110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 333
Target Start/End: Complemental strand, 44648076 - 44647984
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtc 333  Q
    |||||||| ||||||| ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  ||| ||| |||| ||||||||||    
T  44648076 gatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatccgaccactaagtgggtc 44647984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 47799898 - 47799956
Alignment:
Q  276 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||||||||||||||||| ||||||  | |||||||||| || |||||||||||    
T  47799898 caatttggagagagatagacacaaaaaataagtgatgggtcctatcactaagtgggtcc 47799956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 309
Target Start/End: Original strand, 5463867 - 5463934
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagata 309  Q
    |||||||| ||||||||| |||||||  | ||| |||||||||||||| ||| ||||||||||||||||    
T  5463867 gatcctctccatttgatataataaatata-gtatacaatttggagagatataaacacataaaatagata 5463934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 24193668 - 24193620
Alignment:
Q  278 atttggagagagatagacacataaaatagataatgggtcctaccattaa 326  Q
    ||||| |||||||||||||||||||||||| |||| ||| |||||||||    
T  24193668 atttgaagagagatagacacataaaatagacaatgagtcttaccattaa 24193620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 245 - 332
Target Start/End: Complemental strand, 7362676 - 7362589
Alignment:
Q  245 ctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    |||| ||||||| ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||| ||||| ||| |||||    
T  7362676 ctctccatttgacaaaataaatggagttttgcaaattggagagagatagacacaaaaaatagatggtgggtcgtaccactaaatgggt 7362589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 232 - 334
Target Start/End: Original strand, 47500236 - 47500339
Alignment:
Q  232 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgg 330  Q
    |||||||| |||||||| |||||  |||||||||| ||  |    |||||||||||||||||||||| || |||||||  ||||||| |||| |||||||    
T  47500236 aggggttaagatcctctccatttactaaaataaattgagttttgtaatttggagagagatagacacaaaagaatagatggtgggtccaaccactaagtgg 47500335  T
Q  331 gtcc 334  Q
    ||||    
T  47500336 gtcc 47500339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 328
Target Start/End: Complemental strand, 7373985 - 7373892
Alignment:
Q  234 gggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagt 328  Q
    |||||| |||||||||| || | |||||||||||| | ||  ||||||||||||||||||  ||| |||||||| | |||||| ||| |||||||    
T  7373985 gggttaagatcctcttcgttggttaaaataaatggga-tatgcaatttggagagagataggtacaaaaaatagacagtgggtcttactattaagt 7373892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 44390900 - 44390835
Alignment:
Q  230 agaggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagaca 296  Q
    |||||||||| |||||||| |||||   |||||||||||||| |  |||||||||||||||||||||    
T  44390900 agaggggttaagatcctctccatttataaaaataaatggaag-atgcaatttggagagagatagaca 44390835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 45260429 - 45260479
Alignment:
Q  280 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgg 330  Q
    ||||||||||||||||||| |||||||||  ||| |||||||| |||||||    
T  45260429 ttggagagagatagacacaaaaaatagattgtggatcctaccactaagtgg 45260479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 16366630 - 16366537
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||| ||||||||||||  |   ||| ||||||||||||||||| |  ||||||||  ||| |||||||| |||||| ||||    
T  16366630 gatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacataagaaatagatggtggatcctaccactaagtgtgtcc 16366537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 320
Target Start/End: Complemental strand, 18064643 - 18064588
Alignment:
Q  263 aaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctac 320  Q
    |||||||| ||||||||| |||||||||||||||||||||||||| | || |||||||    
T  18064643 aaatggaa-tacacaatt-ggagagagatagacacataaaatagacagtgagtcctac 18064588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 21151264 - 21151171
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||  ||||||||||||  |   ||| |||||||||||||||||||  ||||||||   || |||||||| |||||||||||    
T  21151264 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggaggatcctaccactaagtgggtcc 21151171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 334
Target Start/End: Original strand, 46802331 - 46802387
Alignment:
Q  278 atttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||| |||||||||||||| | ||||||||   |||||||||||| |||||||||||    
T  46802331 atttagagagagatagacataaaaaatagacggtgggtcctaccactaagtgggtcc 46802387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 29341106 - 29341014
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| |||||| || |||||||||| |||  ||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||    
T  29341106 gatcctctccatttggtataataaatgga-gtatgcaatttggagagagatagacacagaaaatagatagtgggtcctactattaagtgggtcc 29341014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 11775905 - 11775812
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| |||||| |||||||||||||  |   ||| ||||||||||||||||||| |||||||||  ||| |||||||| |||||||||||    
T  11775905 gatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtcc 11775812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 35660572 - 35660665
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||||||||| |||||||||||    
T  35660572 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcc 35660665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 242 - 334
Target Start/End: Original strand, 4895699 - 4895791
Alignment:
Q  242 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| |||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||||||||| |||||||||||    
T  4895699 atcctctttatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcc 4895791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 332
Target Start/End: Complemental strand, 43309220 - 43309129
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    ||||||||| |||||||||||||||||||  |   ||| ||||||||||||||||| | |||||||||| ||| || ||||||||| |||||    
T  43309220 gatcctctttatttgataaaataaatggagttttgcaagttggagagagatagacataaaaaatagatagtggatcttaccattaaatgggt 43309129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 18625384 - 18625477
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||| ||||||| |||||||||  |||||||||||| |||||||||||    
T  18625384 gatcctctccatttggcaaaataaatggagatttgcaagttggagagagaaagacacaaaaaatagatggtgggtcctaccactaagtgggtcc 18625477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 32129580 - 32129673
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||  ||||||||||||  |  | || ||||||||||||||||||  |||||||||  |||||||||||| |||||||||||    
T  32129580 gatcctctccatttggcaaaataaatggagttttataagttggagagagatagacaccaaaaatagatggtgggtcctaccactaagtgggtcc 32129673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 37266843 - 37266750
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||| ||||| |||||||||||    
T  37266843 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcataccactaagtgggtcc 37266750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 305
Target Start/End: Original strand, 9460597 - 9460662
Alignment:
Q  239 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaata 305  Q
    |||||||||| |||||| |||||||||| || |||  ||||||||||||||||||||||||| ||||    
T  9460597 aggatcctctccatttggtaaaataaataga-gtatgcaatttggagagagatagacacatataata 9460662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 14349876 - 14349822
Alignment:
Q  280 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||||| ||||||| |||||||||  |||||||||||| |||||||||||    
T  14349876 ttggagagagacagacacaaaaaatagatggtgggtcctaccactaagtgggtcc 14349822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 333
Target Start/End: Original strand, 10362012 - 10362069
Alignment:
Q  276 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtc 333  Q
    ||||| ||||||||||||| ||||||||| | || ||| |||||||||||||||||||    
T  10362012 caattaggagagagatagagacataaaattggtagtggatcctaccattaagtgggtc 10362069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 329
Target Start/End: Complemental strand, 18653438 - 18653385
Alignment:
Q  276 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtg 329  Q
    ||||||| ||||||||||||||| |||||||||| || || |||||||||||||    
T  18653438 caatttgaagagagatagacacaaaaaatagatagtgagttctaccattaagtg 18653385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 329
Target Start/End: Complemental strand, 31653112 - 31653059
Alignment:
Q  276 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtg 329  Q
    ||||||||||||||||| ||||||||||||||||  | ||||||| ||||||||    
T  31653112 caatttggagagagataaacacataaaatagatagcgagtcctactattaagtg 31653059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 334
Target Start/End: Complemental strand, 34827287 - 34827211
Alignment:
Q  258 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||||||  ||  ||| ||||||||||||||||| | |||||||||  ||| |||||||| |||||||||||    
T  34827287 aaaataaatggagttatgcaagttggagagagatagacaaaaaaaatagatggtggatcctaccactaagtgggtcc 34827211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 39902525 - 39902446
Alignment:
Q  243 tcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctacca 322  Q
    |||||| ||||||| ||||||||||||  |  |||| ||||||||||||| |||||  ||||||||  ||||||||||||    
T  39902525 tcctctccatttgacaaaataaatggagttttacaagttggagagagataaacacaagaaatagatggtgggtcctacca 39902446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 330
Target Start/End: Complemental strand, 14688643 - 14688597
Alignment:
Q  284 agagagatagacacataaaatagataatgggtcctaccattaagtgg 330  Q
    |||||||| ||||||||||||||||| ||| | ||||||||||||||    
T  14688643 agagagatcgacacataaaatagatattggattctaccattaagtgg 14688597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 268
Target Start/End: Complemental strand, 21213987 - 21213953
Alignment:
Q  234 gggttaggatcctcttcatttgataaaataaatgg 268  Q
    ||||||||||||||| |||||||||||||||||||    
T  21213987 gggttaggatcctctccatttgataaaataaatgg 21213953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 40753164 - 40753218
Alignment:
Q  280 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||| ||||||||||| |||||| ||  |||||||||||| |||||||||||    
T  40753164 ttggagaaagatagacacaaaaaatatatggtgggtcctaccactaagtgggtcc 40753218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 3057152 - 3057205
Alignment:
Q  276 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtg 329  Q
    ||||||||| ||||||| ||||| |||||||||  ||| |||||||||||||||    
T  3057152 caatttggatagagataaacacaaaaaatagatggtggatcctaccattaagtg 3057205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 13032230 - 13032137
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||  ||||||||||||  |   ||| |||||||||||||||||||  ||||||||  || ||||||||| ||| |||||||    
T  13032230 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaagaaatagatggtgagtcctaccactaaatgggtcc 13032137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 27428879 - 27428932
Alignment:
Q  276 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtg 329  Q
    ||||||||| ||||||||||||| |||||||||  ||  |||||||||||||||    
T  27428879 caatttggaaagagatagacacaaaaaatagatggtgaatcctaccattaagtg 27428932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 31279990 - 31279933
Alignment:
Q  277 aatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||||| | ||||||||||||||| ||  ||||||||| ||||| ||||||||    
T  31279990 aatttggagagtgctagacacataaaataaattgtgggtcctatcattatgtgggtcc 31279933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 305
Target Start/End: Original strand, 2984389 - 2984417
Alignment:
Q  277 aatttggagagagatagacacataaaata 305  Q
    |||||||||||||||||||||||||||||    
T  2984389 aatttggagagagatagacacataaaata 2984417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 236 - 332
Target Start/End: Complemental strand, 36532741 - 36532646
Alignment:
Q  236 gttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    |||| |||||||| ||| |||||||||||||||| || |||||||| ||||||||||||||||||||||| ||| ||| ||||| |||| |||||||    
T  36532741 gttaagatcctctccatctgataaaataaatgga-gttcacaatttagagagagatagacacataaaataaatagtggatcctatcattcagtgggt 36532646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 233 - 304
Target Start/End: Original strand, 15178628 - 15178699
Alignment:
Q  233 ggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaat 304  Q
    ||||||||||| |||| ||||||||||||| |||||||||||| |||||| ||||||||| |||||||||||    
T  15178628 ggggttaggattctctccatttgataaaatgaatggaagtacataatttgaagagagataaacacataaaat 15178699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 19901881 - 19901974
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| |||||| |||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||||||||| |||||||||||    
T  19901881 gatcctctccatttggtaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctaccactaagtgggtcc 19901974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 23610754 - 23610661
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||||||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||| ||||| |||||||||||    
T  23610754 gatcctctccatttgataaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcataccactaagtgggtcc 23610661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 242 - 328
Target Start/End: Original strand, 5815267 - 5815350
Alignment:
Q  242 atcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagt 328  Q
    ||||||| ||||||||||||||||||| |||||| ||||| |||||||||||||||  |||||| |||||||||| ||||| |||||    
T  5815267 atcctctccatttgataaaataaatgg-agtacaaaattttgagagagatagacac--aaaatatataatgggtcataccactaagt 5815350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 237 - 334
Target Start/End: Complemental strand, 1871392 - 1871296
Alignment:
Q  237 ttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||||||  |||||| |||||||||||| |||  ||||||||||||||||||||| | || ||||||| ||| |||||| | |||||||||||    
T  1871392 ttaggatcctctcaatttgacaaaataaatgga-gtatgcaatttggagagagatagacaaaaaatatagatagtggatcctactactaagtgggtcc 1871296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 5416429 - 5416521
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||| ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  |||||||||||| |||||||||||    
T  5416429 gatcctctccatttgacaaaataaatggagttttgcaagttggagagagatagacaca-aaaatagattgtgggtcctaccactaagtgggtcc 5416521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 234 - 334
Target Start/End: Original strand, 56453777 - 56453876
Alignment:
Q  234 gggttaggatcctcttcatttgata-aaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    |||||| |||||||| ||||| ||| ||||||||||||| |  ||||||||||||||||||||||| ||||||| |  ||||||||| ||||||||||||    
T  56453777 gggttaagatcctctccattt-atagaaataaatggaag-atgcaatttggagagagatagacacaaaaaataggtggtgggtcctatcattaagtgggt 56453874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 334
Target Start/End: Complemental strand, 56558400 - 56558298
Alignment:
Q  232 aggggttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtggg 331  Q
    |||||| | |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||||| |||||||||  ||||||||| || ||||||||    
T  56558400 aggggtgaagatcctctccatttggcaaaataaatggagttttgcaagttggagagagatagacacaaaaaatagatggtgggtcctatcactaagtggg 56558301  T
Q  332 tcc 334  Q
    |||    
T  56558300 tcc 56558298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 304
Target Start/End: Original strand, 33841766 - 33841830
Alignment:
Q  239 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaat 304  Q
    |||||||||| |||||| |||| |||||||| ||| |||||||||||||||||||||||| |||||    
T  33841766 aggatcctctccatttgttaaagtaaatgga-gtatacaatttggagagagatagacacaaaaaat 33841830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 333
Target Start/End: Original strand, 3952133 - 3952225
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtc 333  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||||||| | |||||||||  |||||||||||| ||||||||||    
T  3952133 gatcctctccatttggcaaaataaatggagtttggcaagttggagagagatagacaaaaaaaatagatggtgggtcctaccactaagtgggtc 3952225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 326
Target Start/End: Original strand, 42844148 - 42844235
Alignment:
Q  238 taggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaa 326  Q
    ||||||||||| ||| | ||||||||||| ||  || |||||||||||| |||||||||||||||||||| | || ||||||| |||||    
T  42844148 taggatcctctccatattataaaataaatagagtta-acaatttggagatagatagacacataaaatagagagtgtgtcctactattaa 42844235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 275 - 334
Target Start/End: Original strand, 5763159 - 5763218
Alignment:
Q  275 acaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||| ||||||||||||||| ||| |||||||||  |||||||||||| |||||||||||    
T  5763159 acaagttggagagagatagaaacaaaaaatagatggtgggtcctaccactaagtgggtcc 5763218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 334
Target Start/End: Original strand, 47922324 - 47922423
Alignment:
Q  236 gttaggatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataa-aatagataatgggtcctaccattaagtgggtcc 334  Q
    |||| |||||||| |||||| |||||||||| ||  |   ||||||||||||| ||||||||| || |||||||  |||||||||||| |||||||||||    
T  47922324 gttaagatcctctccatttgctaaaataaattgagttttgcaatttggagagatatagacacaaaagaatagatggtgggtcctaccactaagtgggtcc 47922423  T

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Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 24073689 - 24073635
Alignment:
Q  280 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||||||||||||||  ||||||||  |||||||||||| |||||||||||    
T  24073689 ttggagagagatagacacaacaaatagatggtgggtcctaccactaagtgggtcc 24073635  T

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Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 56269074 - 56269132
Alignment:
Q  276 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||||||||||||||||| ||||||  |  |||||||||||| |||||||||||    
T  56269074 caatttggagagagatagacacaaaaaataagtggtgggtcctaccactaagtgggtcc 56269132  T

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Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 18207003 - 18207096
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||| |||||||||| |  |   ||| || |||||||||||||| | |||||||||  |||||||||||| |||||||||||    
T  18207003 gatcctctccatttgacaaaataaatgtagttttgcaagttagagagagatagacaaaaaaaatagatggtgggtcctaccactaagtgggtcc 18207096  T

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Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 276 - 329
Target Start/End: Complemental strand, 23474188 - 23474135
Alignment:
Q  276 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtg 329  Q
    |||||||| ||||||||||||||||||||||||  |||||||||| ||| ||||    
T  23474188 caatttggggagagatagacacataaaatagatggtgggtcctactattgagtg 23474135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 34778533 - 34778440
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||| ||||||||||||||| |||||||||  ||| |||||||| |||||||||||    
T  34778533 gatcctctccatttggcaaaataaatggagttttgcaagttgaagagagatagacacaaaaaatagatggtggatcctaccactaagtgggtcc 34778440  T

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Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 30567970 - 30567922
Alignment:
Q  284 agagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    ||||||||||||||| |||||||||  |||||||||||| |||||||||    
T  30567970 agagagatagacacaaaaaatagatggtgggtcctaccactaagtgggt 30567922  T

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Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 48914516 - 48914572
Alignment:
Q  276 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    |||||| ||||||||| ||||||||||||||||  ||||||||| ||| ||||||||    
T  48914516 caatttagagagagatcgacacataaaatagattgtgggtcctatcataaagtgggt 48914572  T

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Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 308
Target Start/End: Complemental strand, 39862629 - 39862562
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagat 308  Q
    |||||||| ||||||||||||||||| ||| |   ||| || |||||||||||||||| |||||||||    
T  39862629 gatcctctccatttgataaaataaatagaattttgcaagtttgagagagatagacacaaaaaatagat 39862562  T

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Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 13493387 - 13493291
Alignment:
Q  239 aggatcctcttcatttgataaaataaatggaagtacacaatttggagagaga--tagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||||  |||||| |||||||||||| |||  |||||| ||||||||  ||||||| ||||||||||| ||| ||| |||| |||||| ||||    
T  13493387 aggatcctctctatttgacaaaataaatgga-gtatgcaatttagagagagagatagacacgtaaaatagatagtggatcccaccactaagtgagtcc 13493291  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 5818013 - 5817976
Alignment:
Q  275 acaatttggagagagatagacacataaaatagataatg 312  Q
    |||||||||||||||||||||||| |||| ||||||||    
T  5818013 acaatttggagagagatagacacaaaaaagagataatg 5817976  T

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Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 332
Target Start/End: Original strand, 36003216 - 36003300
Alignment:
Q  247 cttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    |||||||||  |||||||||| |||||  ||||||||||||||||| | ||| |||||| ||| |||||| |  ||||||||||||    
T  36003216 cttcatttgtcaaaataaatg-aagtatgcaatttggagagagataaatacaaaaaataaatattgggtcatgtcattaagtgggt 36003300  T

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Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 50483554 - 50483607
Alignment:
Q  276 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtg 329  Q
    ||||||||||| |||||||||| ||||||||||| | | ||| |||||||||||    
T  50483554 caatttggagacagatagacacgtaaaatagatattcgatcccaccattaagtg 50483607  T

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Target: scaffold0062 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 258 - 332
Target Start/End: Complemental strand, 58774 - 58701
Alignment:
Q  258 aaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    ||||||||||||| ||  ||||||||||||||||| ||| |||||||||||| ||| ||||||||||||||||||    
T  58774 aaaataaatggaa-tatgcaatttggagagagataaacatataaaatagatagtggatcctaccattaagtgggt 58701  T

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Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 241 - 334
Target Start/End: Complemental strand, 208175 - 208082
Alignment:
Q  241 gatcctcttcatttgataaaataaatggaagtacacaatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||||| ||||||  ||||||||||||  |   ||| ||||||||||||| ||||| |||||||||  |||||||||||| |||||||||||    
T  208175 gatcctctccatttggcaaaataaatggagttttgcaagttggagagagataaacacaaaaaatagatggtgggtcctaccactaagtgggtcc 208082  T

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Target: scaffold0250 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 280 - 332
Target Start/End: Complemental strand, 7220 - 7168
Alignment:
Q  280 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggt 332  Q
    ||||||||||||||||||| |||||||||  |||||||||| |||||||||||    
T  7220 ttggagagagatagacacaaaaaatagatggtgggtcctactattaagtgggt 7168  T

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Target: scaffold0035 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 16399 - 16453
Alignment:
Q  280 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    ||||||||||||||||||| |||||| ||  |||||||||||| |||||||||||    
T  16399 ttggagagagatagacacaaaaaataaatggtgggtcctaccactaagtgggtcc 16453  T

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Target: scaffold0121 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 334
Target Start/End: Original strand, 29567 - 29625
Alignment:
Q  276 caatttggagagagatagacacataaaatagataatgggtcctaccattaagtgggtcc 334  Q
    |||||| |||||||||||| ||||||||||| |||| ||||||| ||||| ||| ||||    
T  29567 caatttagagagagatagagacataaaataggtaataggtcctagcattacgtgagtcc 29625  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 330
Target Start/End: Original strand, 9203 - 9253
Alignment:
Q  280 ttggagagagatagacacataaaatagataatgggtcctaccattaagtgg 330  Q
    ||||||||||||||||||| |||||||||  ||||||| |||| |||||||    
T  9203 ttggagagagatagacacagaaaatagatggtgggtccaaccactaagtgg 9253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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