View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6803_low_9 (Length: 306)
Name: NF6803_low_9
Description: NF6803
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6803_low_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 63 - 306
Target Start/End: Complemental strand, 53615983 - 53615740
Alignment:
| Q |
63 |
acatcctctaaggtaaagattgctttaaatagcaacaatggtgagaaggtagcaatcaaggtcattgacaaacaaatggtcttgaaaaacaatctaaaac |
162 |
Q |
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| T |
53615983 |
acattctctaaggtaaagattgctttaaatagcaacaatggtgagaaggtagcaatcaaggtcattgacaaacaaatggtcttgaaaaacaatctaaaac |
53615884 |
T |
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| Q |
163 |
atcaggtaaacctcattttggtccttctttttcccccttcaaaaattaggtattttacttcaaatattaaggccaaaacatgtttcaggtacaaagtgag |
262 |
Q |
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| T |
53615883 |
atcaggtaaacctcattttggtccttctttttcccccttcaaaaagtaggtattttacttcaaatattaaggccaaaacatgtttcaggtacaaagtgag |
53615784 |
T |
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| Q |
263 |
attagaacaatgaaacttctacatcatccaaatatagttagaat |
306 |
Q |
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| T |
53615783 |
attagaacaatgaaacttctacatcatccaaatatagttagaat |
53615740 |
T |
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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 275
Target Start/End: Complemental strand, 17923576 - 17923526
Alignment:
| Q |
225 |
aatattaaggccaaaacatgtttcaggtacaaagtgagattagaacaatga |
275 |
Q |
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| T |
17923576 |
aatattatggccaaaccatgtttcaggtacaaagtgagattagaacaatga |
17923526 |
T |
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