View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6804_low_1 (Length: 388)
Name: NF6804_low_1
Description: NF6804
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6804_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Complemental strand, 38175025 - 38174655
Alignment:
| Q |
1 |
tcagaaaaataccaagtgccaattttgaaccagacccatcattgctttttccaacccgacaaatcccatcatcgtttacatgaaggttttcatcatcggt |
100 |
Q |
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| T |
38175025 |
tcagaaaaataccaagtaccaattttgaacccgacccatcattgctttttccaatccgacaaatcccatcatcgtttacatgaaggttttcatcatcggt |
38174926 |
T |
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| Q |
101 |
gatcaactgagttaaattctgagactcagtgtgatccggttcggcgcaatcaaccttgcaatcgttaaaacagggtgtctccggcggcagtggatcagag |
200 |
Q |
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| T |
38174925 |
gatcaactgagttaaattctgagactcagtgtgatccggttcggcgcaatcaaccttgcaatcgttaaaacagggtgtctccggtggcagtggatcagag |
38174826 |
T |
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| Q |
201 |
gtttgggtttgaaacggtttactggagttgggttttgtgaaacgggtacggtttttgattaaaagatcgatgagggacgttgggaaaccggtctgaacgg |
300 |
Q |
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| T |
38174825 |
gtttgggtttgaaacggtttactggagttgggttttgtgaaacgggtacggtttttgattaaaagatcgatgagggacgttgggaaaccggtctgaacag |
38174726 |
T |
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| Q |
301 |
tgaaagaagaagcgcgtttagatgaatgaaaatcggcaacgatttggaaaactcgggttaccctgtttttg |
371 |
Q |
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| T |
38174725 |
tgaaagaagaagcgcgtttagatgaatgaagatcggcgacgatttggaaaactcgggttaccctgtttttg |
38174655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 93 - 171
Target Start/End: Complemental strand, 28961240 - 28961162
Alignment:
| Q |
93 |
tcatcggtgatcaactgagttaaattctgagactcagtgtgatccggttcggcgcaatcaaccttgcaatcgttaaaac |
171 |
Q |
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| T |
28961240 |
tcatcggtgatcaactgagttaaattctgagactcggtgtgatccgactcggcgcaaccaaccttgcagtcgttaaaac |
28961162 |
T |
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