View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6805_low_1 (Length: 576)
Name: NF6805_low_1
Description: NF6805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6805_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 45643105 - 45642754
Alignment:
| Q |
18 |
actgagatcattttcgatatccatcttatgaaattgttcctcaacttctttcaatgtaattggatgaaaacgtgtaattgttttaatatgaaaacatatt |
117 |
Q |
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| T |
45643105 |
actgagatcattttcgatatccatcttataaaattgttcttcaacttctttcaatgtaattggatgaaaacgtgtaattgttttaatatgaaaacatatt |
45643006 |
T |
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| Q |
118 |
tggagtcttaaatctaaataaagtttgatcttaaatttttagctggttcaaattagagtttttcatcaaattgaaatgaagtttaggtaaaaattataaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
45643005 |
tggagtcttaaatctaaataaagtttgatcttaaatttttaactggtttaaattagagtttttcatcaaattgaaatgaagtttaagtaaaaattataaa |
45642906 |
T |
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| Q |
218 |
tatatgttatgtcgcnnnnnnnntataagtaggtgacannnnnnnattgtcattaagaattaaatattgtaactcgtccgtataaatatg----ggtcac |
313 |
Q |
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| T |
45642905 |
tatatgttatgtcgc-aaaaaaatataagtaggtgacatttttttattgttattaaggattaaatattgtaactcgtccgtataaatatgtattggtcac |
45642807 |
T |
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| Q |
314 |
ttgagttttgatccttggaattgttaattttttcaaacagtaattactaatca |
366 |
Q |
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| T |
45642806 |
ttgagttttgatccttggaattgttaattttttcaaacagtaattactaatca |
45642754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 423 - 571
Target Start/End: Complemental strand, 45642697 - 45642548
Alignment:
| Q |
423 |
ccccaccaccaccaatacacattacacaacatctccaccttctccaccacccatcaacgctaacaccgtcaattctgacacatcaacgccaaatccatga |
522 |
Q |
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| T |
45642697 |
ccccaccaccaccaatacacattacacaacatctccaccttctccaccacccatcaacgctaacaccgtcaattctgacacatcaacgccaaatccatga |
45642598 |
T |
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| Q |
523 |
cccatcaacgccaattccgaaa-cctattccccatcgttattcatctcag |
571 |
Q |
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| T |
45642597 |
cccatcaacgccaattccaaaaccctattccccatcgttattcatttcag |
45642548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 18941451 - 18941519
Alignment:
| Q |
104 |
tatgaaaacatatttggagtcttaaatctaaataaagtttgatcttaaatttttagctggttcaaatta |
172 |
Q |
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| T |
18941451 |
tatgataacatatttgaagttttgaatttagataaagtttgatcttcaatttttggctagttcaaatta |
18941519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 110 - 199
Target Start/End: Original strand, 29932109 - 29932198
Alignment:
| Q |
110 |
aacatatttggagtcttaaatctaaataaagtttgatcttaaatttttagctggttcaaattagagtttttcatcaaattgaaatgaagt |
199 |
Q |
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| T |
29932109 |
aacatatttggaatcttaattttaaataaagtttgttcttaagtttttagctagttcaaattagagtttttcatcaaattcaaatgaagt |
29932198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 27136290 - 27136233
Alignment:
| Q |
104 |
tatgaaaacatatttggagtcttaaatctaaataaagtttgatcttaaatttttagct |
161 |
Q |
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| T |
27136290 |
tatgagaacatatttggagtattgaatctaaatatagtttgatcttcaaattttagct |
27136233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 298 - 326
Target Start/End: Complemental strand, 22590865 - 22590837
Alignment:
| Q |
298 |
tataaatatgggtcacttgagttttgatc |
326 |
Q |
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| T |
22590865 |
tataaatatgggtcacttgagttttgatc |
22590837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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