View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6805_low_2 (Length: 520)
Name: NF6805_low_2
Description: NF6805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6805_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 39779952 - 39779447
Alignment:
| Q |
1 |
cagaaaaaatattgagaaggacattcacaatctctcttttaaaagttaatnnnnnnnngttgaaagacgtgatttagacggtgtttcaaactgagaagga |
100 |
Q |
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| T |
39779952 |
cagaaaaaatattgagaaggacattcacaatct-tcttttaaaagctaataaaaaaaagttgaaagacgtgatttagacggtgtttcaaactgagaagga |
39779854 |
T |
|
| Q |
101 |
cattcacaattttcttttgaatgcatggtaaatctcaaatttaccattcctttgagagaacagagtaattaatctataagtgaacatgctagcgcaactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39779853 |
cattcacaattttcttttgaatgcatggtaaatctcaaatttaccattcctttgagagaacagagtaattaatctataagtgaacatgttagcgcaactt |
39779754 |
T |
|
| Q |
201 |
gttttatttcttgagttttaagtaatctaaagatgatagatagagatgaataaaagtaatgaatgctttgatcagaggcctatctgaccattgcccagtc |
300 |
Q |
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|
||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39779753 |
gttttatttcttgagttctaagtaatctaaagatgatcgatagagatgaataaaagtaatgaatgctttgatcagaggactatctgaccattgcccagtc |
39779654 |
T |
|
| Q |
301 |
tcattaccatcgatgaggagaattgaggtcctagtcctcaatgtatgtggaaatattgggcggatcttctaggttataagaaatttgttcaaaaacaatg |
400 |
Q |
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|||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39779653 |
tcattaccatcgatgaggagaattgaggtcgtcgtcctcaatgtatgttgaaatattgggcggatcttctaggttataagaaatttgttcaaaaacaatg |
39779554 |
T |
|
| Q |
401 |
gcactctcatacgtggatggttggggagaatttgtactaaaggaaaaactcaaaaagattaaaggtagtttgagaacttggaaccaagatcacaattaaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39779553 |
gcactctcatacgtggatggttggggagaatttgtactaaaggaaaaactcaaaaagattaaaggtagtttgagaacttggaaccaagatcacaattaaa |
39779454 |
T |
|
| Q |
501 |
atcttga |
507 |
Q |
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||||||| |
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| T |
39779453 |
atcttga |
39779447 |
T |
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