View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6805_low_3 (Length: 472)
Name: NF6805_low_3
Description: NF6805
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6805_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 7 - 459
Target Start/End: Original strand, 14312983 - 14313435
Alignment:
| Q |
7 |
gagatgtacaacccaggttgagaacgtgtgaaaacagcgcaagggaaagcgccgctcccacgattccaagatcttcctctgcgcgcaccgctccggcacg |
106 |
Q |
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| T |
14312983 |
gagatgtacaacccaggttgagaacgtgtgaaaacggcgcaagggaaagcgccgctcccacgattccaagatcttcctctgcgcgcaccgctccggcacg |
14313082 |
T |
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| Q |
107 |
gtggagagagaataacacatgagatctcacaatctatatcacgctcttaataaccattcttggaacaacaaatgtctgaatgctgaattgaaacatagcc |
206 |
Q |
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| T |
14313083 |
gtggagagagaaaaacacatgagatctcacaatctatatcacgctcttaacaaccattcttggaacaacaaatgtctgaatgctgaattgaaacatagcc |
14313182 |
T |
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| Q |
207 |
tcaaataaataagaactacttaatatcagattttgcactggtcagagtgtatgcctatatctattgaaaactagattaacaacggtctggaacatagagc |
306 |
Q |
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| T |
14313183 |
tcaaataaataagcactacttaatatcagattttgcactggtcagagtgtatgcctatatctattgaaaactagattaacaacggtctggaacattgagc |
14313282 |
T |
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| Q |
307 |
ctgatgcaaccaagaaacattgagtagaaccaaagtagacgagaaagccaaaccaaaaatgactaccaaatgaccgcagtttctaattaaaaagcttaaa |
406 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
14313283 |
ctgatgcaaccaagaaacattgagtagaaccaaagtatacgagaaagccaaaccaaaaatgactaccaaatgaccgcagtttctaattgacaagcttaaa |
14313382 |
T |
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| Q |
407 |
aaacaaattagtgtggcaagattataaattataaaacaataccgtgatgtcca |
459 |
Q |
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| T |
14313383 |
aaacaaattagtgtggcaagattataaattctaaaacaataccgtgatgtcca |
14313435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 2310416 - 2310345
Alignment:
| Q |
35 |
tgaaaacagcgcaagggaaagcgccgctcccacgattccaagatcttcctctg--cgcgcaccgctccggca |
104 |
Q |
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| T |
2310416 |
tgaaaccagcacgagggaaagtgccgcttccacgattttaagatcttcctctgcacgctcaccgctccggca |
2310345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 27008958 - 27008875
Alignment:
| Q |
22 |
ggttgagaacgtgtgaaaacagcgcaagggaaagcgccgctcccacgattccaagatcttcctctgcgcg--caccgctccggc |
103 |
Q |
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| T |
27008958 |
ggttaagaacgtgtgaaaccagcacgggataaagcgctgctcctacgatttcaagatcttcctctgcgcgctcaccgctccggc |
27008875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 519404 - 519457
Alignment:
| Q |
52 |
aaagcgccgctcccacgattccaagatcttcctc--tgcgcgcaccgctccggc |
103 |
Q |
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| T |
519404 |
aaagcgctgctcctacgattccaagatcttcctctgtgcgctcaccgctccggc |
519457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 89
Target Start/End: Original strand, 35064416 - 35064497
Alignment:
| Q |
8 |
agatgtacaacccaggttgagaacgtgtgaaaacagcgcaagggaaagcgccgctcccacgattccaagatcttcctctgcg |
89 |
Q |
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| T |
35064416 |
agatgtgcgacccgggttaagaacgtgtgaaaccagcacgggataaagcgctgatcctacgattccaagatcttcctctgcg |
35064497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 8 - 92
Target Start/End: Original strand, 37127953 - 37128037
Alignment:
| Q |
8 |
agatgtacaacccaggttgagaacgtgtgaaaacagcgcaagggaaagcgccgctcccacgattccaagatcttcctctgcgcgc |
92 |
Q |
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| T |
37127953 |
agatgtgcgacccgggttaagaacgtgtgaaaccagcacgggataaagcgctgatcctacgattccaagatcttcctctacgcgc |
37128037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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